| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PputGB1_3933 |
|---|
| Symbol | |
|---|
| ID | 5871727 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida GB-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010322 |
|---|
| Strand | - |
|---|
| Start bp | 4377034 |
|---|
| End bp | 4378251 |
|---|
| Gene Length | 1218 bp |
|---|
| Protein Length | 405 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 641549055 |
|---|
| Product | PAS/PAC sensor signal transduction histidine kinase |
|---|
| Protein accession | YP_001670159 |
|---|
| Protein GI | 167034928 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG0642] Signal transduction histidine kinase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 27 |
|---|
| Plasmid unclonability p-value | 0.571484 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 53 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCCCCAGG CCGCCCACAT AACCCGAGCC CCCGATCAAC AGGGGCAAAC CCCGGTCGAG
CAGGACAGCC GCCTGGGTAT CGAGCAAGCC TTCACCCTGT TCAATCAGGT ATCCAGCCAG
CTGAGCCAGT CCTACAGCCT GCTCGAAGCT CGGGTCAGTG AGCTCAAGGG TGAGCTGGCC
GTGGTCAGCG CCCAGCGCAT TGACGAACTC AGCGAAAAAG AACGCCTGGC CAACCGCCTG
CAGAACCTGC TGGATCTGCT GCCTGGTGGG GTGATCGTGA TCGATGGTCA GGGCCTGGTG
CGCGAAGCCA ACCCGGCCGC CTCCCAGCTG CTTGGCGAGC CGCTTATCGG CCAATTGTGG
CGCCAGGTAA TCGCCCGCAG CTTCGCCCCG CGCAAGGATG ACGGCCACGA AGTCTCACTG
CGCGACGGCC GCCGCCTGTC GATCGCCACT CGCTCGCTGG ATGCCGAACC CGGCCAGTTG
GTGCTGCTCA ACGACCTGAC TGAAACCCGT CGCCTGCAAG ACCAGCTGGC ACGTCACGAG
CGTCTGTCGT CGCTGGGGCG CATGGTCGCC TCGCTGGCCC ATCAGATCCG CACACCGCTG
TCGGCCGCCA TGCTCTACGC CAGCCACCTG GCCGATGACG AGCCGGCACT GAGCGCGGAA
ACCCGCCAGC GCTTCGCCGC TACCTTGAAA GAGCGTCTGC ATGAGCTGGA GCACCAGGTG
CGTGACATGC TGGTATTCGC CCGTGGCGAG TTGCCGCTGG GTGATCGGGT GACCCCGAAA
GCCTTGTTCC AGGCCCTGCA GCAAGCGGCC CAGGCGCATG TGCAGGGGCA CACCGTGCGC
TGGCAGTGTG ACAGCCACCT GGGTGAGCTG CTGTGCAACC GCGACACCCT GGTCGGCGCT
TTGCTCAACC TGATCGAAAA TGCCCTGCAG GCCAGCGACG GCCCGGCGCG GCTCAAGGTG
CACCTGTACC GCCGCGAATG CAGCTTGCAC CTGTGCGTCA GCGATGCCGG CAGCGGCATC
GATGCTGATT TGCTCGGCCG CCTGGGTGAG CCGTTTCTTA CCACCAAGGC CACAGGTACG
GGCTTGGGCC TGGCTGTAGT CAAGGCGGTG GTGCGGGCGC ACCAGGGCAC GATCAACCTG
CGCTCGAAGG TAGGCCGGGG TACCTGCGTG CGGGTAGAAC TGCCCTTGAT CGACGGGCAA
TTGGCGGAGG GTGTGTAA
|
|---|
| Protein sequence | MPQAAHITRA PDQQGQTPVE QDSRLGIEQA FTLFNQVSSQ LSQSYSLLEA RVSELKGELA
VVSAQRIDEL SEKERLANRL QNLLDLLPGG VIVIDGQGLV REANPAASQL LGEPLIGQLW
RQVIARSFAP RKDDGHEVSL RDGRRLSIAT RSLDAEPGQL VLLNDLTETR RLQDQLARHE
RLSSLGRMVA SLAHQIRTPL SAAMLYASHL ADDEPALSAE TRQRFAATLK ERLHELEHQV
RDMLVFARGE LPLGDRVTPK ALFQALQQAA QAHVQGHTVR WQCDSHLGEL LCNRDTLVGA
LLNLIENALQ ASDGPARLKV HLYRRECSLH LCVSDAGSGI DADLLGRLGE PFLTTKATGT
GLGLAVVKAV VRAHQGTINL RSKVGRGTCV RVELPLIDGQ LAEGV
|
|---|
| |