| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PputGB1_3443 |
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| Symbol | |
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| ID | 5871229 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida GB-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010322 |
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| Strand | + |
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| Start bp | 3861635 |
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| End bp | 3862321 |
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| Gene Length | 687 bp |
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| Protein Length | 228 aa |
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| Translation table | 11 |
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| GC content | 56% |
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| IMG OID | 641548559 |
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| Product | XRE family transcriptional regulator |
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| Protein accession | YP_001669670 |
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| Protein GI | 167034439 |
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| COG category | [K] Transcription
[T] Signal transduction mechanisms |
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| COG ID | [COG1974] SOS-response transcriptional repressors (RecA-mediated autopeptidases) |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 18 |
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| Plasmid unclonability p-value | 0.00400113 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 0 |
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| Fosmid unclonability p-value | 9.66468e-17 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | unclonable |
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| |
Sequence |
| Gene sequence | ATGAGCACAC TTCAAGAACG TTTGCGCCAA GTCATGGCTG GCCCACCGAA AATCACGCAG
GCCTCACTAG CCCGCGCCTG CGGAATCACA GCGCCCTCGG TGAATGATTG GCTTTCGGGC
AAGACCAAAA CCATCGAGGG GCAAAACCTG CTCCTTGCCG CTGAGCATTT GGGCGTTACG
CCCAAGTGGC TAGCAACCGG AAGGGGGGCA ATGAAAAAAT CGCCATCTGG CGAAGTAGAA
AGCTCAAATG TGGAAGCCGC TCTGCAGCCC ACAAGATCCT TCTCCTACCC CGAAATTAGT
TGGGTTCAGG CCGGTATCGC TAGGGAGGCG GTCGAGATGG GTAACATTGC TCTATGCCCC
CAGCACACGT CTGACGTATG GGCTGGCGAG GACGCCTTCT GGCTAAGGGT GATTGGCGAC
TCAATGACAT TGTCTTCGGG AAGCCCGTCG TTCCCTGAGG GCTTCCTGAT TCTGATAGCT
CCAGACATTG AGCCAAGGCC GGGGCAGTTT GTCGTGGCCA GGATGACCAG CACCAACGAA
GCGACTTTCA AACAGCTTGT TCGCGATGCT GGGGAGCTAT ACCTGAAGCC ACTGAACTCA
GCCTACCCGA CCAGAGCTGT TGACGACGCA TGGGAGATCG TTGGCACGGT CGTCGACGGC
AAAATGCCCA AATCGGTATT CCTGTAG
|
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| Protein sequence | MSTLQERLRQ VMAGPPKITQ ASLARACGIT APSVNDWLSG KTKTIEGQNL LLAAEHLGVT
PKWLATGRGA MKKSPSGEVE SSNVEAALQP TRSFSYPEIS WVQAGIAREA VEMGNIALCP
QHTSDVWAGE DAFWLRVIGD SMTLSSGSPS FPEGFLILIA PDIEPRPGQF VVARMTSTNE
ATFKQLVRDA GELYLKPLNS AYPTRAVDDA WEIVGTVVDG KMPKSVFL
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