| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PputGB1_3388 |
|---|
| Symbol | |
|---|
| ID | 5871173 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida GB-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010322 |
|---|
| Strand | - |
|---|
| Start bp | 3820676 |
|---|
| End bp | 3821107 |
|---|
| Gene Length | 432 bp |
|---|
| Protein Length | 143 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 641548503 |
|---|
| Product | lysozyme |
|---|
| Protein accession | YP_001669615 |
|---|
| Protein GI | 167034384 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG3772] Phage-related lysozyme (muraminidase) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 33 |
|---|
| Plasmid unclonability p-value | 0.836181 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 18 |
|---|
| Fosmid unclonability p-value | 0.000487886 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGCGGACAT CGCAACGCGG CTTGAGCCTC ATCAAGTCGT TCGAGGGCCT GCGTCTGCAG
GCATATCAAG ATTCAGTAGG CGTCTGGACG ATTGGCTACG GGACCACTCG TGGCGTGAAG
GCCGGCATGA AAATCAGCAA GGACCAGGCA GAGCGCATGC TGCTGAACGA CGTGCAGCGC
TTCGAGCCTG AAGTTGAGCG CCTGATCAAG GTGCCGCTGA ATCAGGATCA GTGGGACGCC
CTGATGAGCT TCACCTACAA CCTGGGGGCG GCAAACCTCG AATCGTCCAC GCTCCGCCGA
CTGCTCAATG CTGGCAACTA CGCAGCTGCT GCTGAGCAGT TCCCGCGCTG GAACAAGGCT
GGCGGGCAAG TACTTGCCGG CCTAACCCGT CGGCGTGCAG CTGAGCGGGA GCTGTTCCTG
GGGGCCGCGT GA
|
|---|
| Protein sequence | MRTSQRGLSL IKSFEGLRLQ AYQDSVGVWT IGYGTTRGVK AGMKISKDQA ERMLLNDVQR
FEPEVERLIK VPLNQDQWDA LMSFTYNLGA ANLESSTLRR LLNAGNYAAA AEQFPRWNKA
GGQVLAGLTR RRAAERELFL GAA
|
|---|
| |