Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PputGB1_3189 |
Symbol | |
ID | 5870974 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas putida GB-1 |
Kingdom | Bacteria |
Replicon accession | NC_010322 |
Strand | + |
Start bp | 3566616 |
End bp | 3568310 |
Gene Length | 1695 bp |
Protein Length | 564 aa |
Translation table | 11 |
GC content | 56% |
IMG OID | 641548305 |
Product | hypothetical protein |
Protein accession | YP_001669417 |
Protein GI | 167034186 |
COG category | [S] Function unknown |
COG ID | [COG1479] Uncharacterized conserved protein |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 22 |
Plasmid unclonability p-value | 0.362405 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 56 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | GTGGACGCCT CGTCAACCAT TCGCAGCATG CTGGCCAACA ACCGCATCGT GGTGCCTGCC TATCAACGCG CCTATGCCTG GGATACGCCA GTTGAAGGTT CGACCCGCGC CAGCCAGACA CAGGTGTTTC TTTCCGACCT GGAAGCCTAC CGCAACAGCC ACTCCCGCAG CCCTTATTAC TTCGGCCATT TCCTGTTCGA ACAGACGCAG GGAGAGTATC GGGTCATCGA CGGCCAGCAG CGCCTGACCA CGATCACGCT GTTTTTGGCG GCACTGTTCG CGTGCTTGCA AGCCAAACGC GCCCTGACCG AAGATGAGCA GGACTGCTAC AAGGACATGA TCAGACGGGA CAGTCAGATC CGCTTGAAGA CGGTCGAATA CGACAACCAG ATCTTTGTCG ATTATGTAAT CAACCAATCC AGAACTGTCG CTCCTGCTTC GCTCACCACA TCTGCCCAGC GACTCATCAA TGGGTTCGAC TTCTTCAAAA AGAAGCTGGG GGCTCAGCCT GAAGCGTACC TGACGGACAT GCTGCGGATA GTGTCCCAGG CTTCGTGCAG TACGCACCCG GTGCGGGACG AGGCAGAAGC CATTCAGATG TTCATCTTCC AGAACAACCG CGGCAAGCGC CCGTCCAACC TTGAGGTGGT GAAGGCGCAG TTCATGTATG CCATCCACCT TCATGGCGAA GATCAGCAAG CGAAAGACAG CCTGATCGAA GAGGTCCAGC AGCGCTTCGA GACCATCTAC AAGTCGATCT CAGCCATTGA ATACCGCATC AACGAAGACG ACGTGCTGCA GTACACCTTG CGCGTCCATT TCAATACCCT GTGGGAGAGT GGCGCGCTGG AGCGGATTGA GAAAATGCTC GCAGCTGAGG CGCCTCTTGA GTTTGTGCGA GACTTCACCT GCTCGCTGGC CATCAGTTTC GAGCATTTGT CAGAGTTCTT CGGCGATGAC GAGCGAAGCA GTTTTGCAAT CCACTCACTG GTGAGCTTGG GCGGGATCGC GGTTGTATTG CCATTTATTC TCAAGGCCTA TCGCTTTGGT CTCCCCCTGC CAGACAAGAA CGAGCTTTGC GTTGCCTTTG AAAGCCTGAT CATCCGCCAT CGCCTGATTG GTACCCGCGC GGATATCACC TCCCGCATCA ATGATGTTTA CGAGGCGTTT ACCAGCGACG CGCCGACGAT AGCCCCTATC CTCGCGCGCA TCGAGTACCT CAAGACCGTA ACCAGCGGCT GGTGGGCTTT TTGGAACAAT GAAAGGCTGG CAGAGGCTTT AGAATGGAAT ATCCGGCATT CCATCGCCAG GCATTTGCTC TGGAAGTATG AAGTCCACCT GGAAGGACAA GGCCAGCGCG GTTACGCGCC ACGGCGCAGC AACGACACCG AGCGTCCAGA GCTGGAGCAT ATCGCGCCCA GCACCGAGCC CGCCGCTCGC CCACATGGTT ACGGTACCTA CGACGAAACG TTCAAGGGCG AATATCTGAA CTGCCTCGGC AATTACTTGC TGCTGTCCAA ACCCCACAAC TGTGCAGTGG GGAACATCCC ATTCAGCGAA AAGCTGGCGA CCTATAAGCA CACCTTCCAG CAGCGGGAAA TCGCTACGTT CGTCAGCGCC GGCGGCCTGT GGGACCGAGA TGCAATCCAG GTTCGGCACG ATAAAATCGT CGCCGCACTG ATGGCTGAGC TTTAA
|
Protein sequence | MDASSTIRSM LANNRIVVPA YQRAYAWDTP VEGSTRASQT QVFLSDLEAY RNSHSRSPYY FGHFLFEQTQ GEYRVIDGQQ RLTTITLFLA ALFACLQAKR ALTEDEQDCY KDMIRRDSQI RLKTVEYDNQ IFVDYVINQS RTVAPASLTT SAQRLINGFD FFKKKLGAQP EAYLTDMLRI VSQASCSTHP VRDEAEAIQM FIFQNNRGKR PSNLEVVKAQ FMYAIHLHGE DQQAKDSLIE EVQQRFETIY KSISAIEYRI NEDDVLQYTL RVHFNTLWES GALERIEKML AAEAPLEFVR DFTCSLAISF EHLSEFFGDD ERSSFAIHSL VSLGGIAVVL PFILKAYRFG LPLPDKNELC VAFESLIIRH RLIGTRADIT SRINDVYEAF TSDAPTIAPI LARIEYLKTV TSGWWAFWNN ERLAEALEWN IRHSIARHLL WKYEVHLEGQ GQRGYAPRRS NDTERPELEH IAPSTEPAAR PHGYGTYDET FKGEYLNCLG NYLLLSKPHN CAVGNIPFSE KLATYKHTFQ QREIATFVSA GGLWDRDAIQ VRHDKIVAAL MAEL
|
| |