Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PputGB1_3115 |
Symbol | |
ID | 5870900 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas putida GB-1 |
Kingdom | Bacteria |
Replicon accession | NC_010322 |
Strand | + |
Start bp | 3485523 |
End bp | 3486554 |
Gene Length | 1032 bp |
Protein Length | 343 aa |
Translation table | 11 |
GC content | 62% |
IMG OID | 641548231 |
Product | transcriptional factor MdcH |
Protein accession | YP_001669343 |
Protein GI | 167034112 |
COG category | [K] Transcription |
COG ID | [COG2378] Predicted transcriptional regulator |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 19 |
Plasmid unclonability p-value | 0.020795 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 40 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGATTCTCT TGCCTTCAGC CAAGACCCAT ACCGCGCTGA GCCGCCAGTG GGAGCTGCTG CGCCAGCTGC CAAAACGCGC CCCCGGCAGC ACGGTGACTG AACTGCTGGC CCGCCTGACG GATGCGGGCT ACGTCATCAG CAGACGCAGC ATCGAGCGCG ATCTGCATGA CCTTTCCCTG GTGTTTCCGT TGCAGCGCAA CGAAGGGGGA ACGCCATCGG GCTGGTACTG GAAGCCAGGT GTGAGTGTCG AGCTGCAAGG CATCACGTTG ACCGAAGCCG TCAGCCTGGC GCTGGTCGAG GACGCCGTTC GCCCCTTGTT GCCAGGGAGC ATGCTGAGTG TTCTGGAACC ACGCTTCGAG CACGCACGGC AAAAGCTCAA GGGGTTAGGC GACGGCAACC CAGCCGCCCG CTGGCCAGAC AAAGTGGCCA GCGTGCGGCC GGACTTCAAC ATGCAAGCGC CGCAGGTTCA TGCAGAAACG CTTGAAGCCC TGCAGCACGC CTTGATCAGC GAACAGCAGA TCCGCTGCCA GTACTATTCG GCGCACAATG ACAAGCAAAG CGACTTGACA CTCAACCCGC TGGCGATTGT GCAGCGCGGC TTGATCACTT ACCTCATCGC CACGGCGGCG CCCTACACCG ATGTCCGTCA ATTCGCGGTG CACCGCTTCC GAGAGGTGAC CGTACTCGAC TCGCCGTGCC AGGGGCTGGA GTCGTTCGAA TTGCACAGCT ACCTCGCCAC GGATGCCCTG CAATTTGGCA AACCCGAAAA GATCTGCCTG GAAGCTTGGG TGAGCGAACG CCAGGCACGC CTGATTCGCG AAACCCCACT GAGCACGGAC ATGACGCTCG AACCGTGGGA GCAAGGCTTC CGCCTTCAGG CAACGGTCAA CAATACCTGG CAGCTGCACT GGTGGCTGTT GTCGCTCGGT GACGCGGTGG TGGTGCATGC GCCAGCACAA TTGCGCCAAC AGATCGGCGA TACGCTGCGC CGCGCCGCCG CCGCGTACGC GCCTGAACAG TGCCTGGCCT GA
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Protein sequence | MILLPSAKTH TALSRQWELL RQLPKRAPGS TVTELLARLT DAGYVISRRS IERDLHDLSL VFPLQRNEGG TPSGWYWKPG VSVELQGITL TEAVSLALVE DAVRPLLPGS MLSVLEPRFE HARQKLKGLG DGNPAARWPD KVASVRPDFN MQAPQVHAET LEALQHALIS EQQIRCQYYS AHNDKQSDLT LNPLAIVQRG LITYLIATAA PYTDVRQFAV HRFREVTVLD SPCQGLESFE LHSYLATDAL QFGKPEKICL EAWVSERQAR LIRETPLSTD MTLEPWEQGF RLQATVNNTW QLHWWLLSLG DAVVVHAPAQ LRQQIGDTLR RAAAAYAPEQ CLA
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