Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PputGB1_3048 |
Symbol | |
ID | 5870833 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas putida GB-1 |
Kingdom | Bacteria |
Replicon accession | NC_010322 |
Strand | + |
Start bp | 3400110 |
End bp | 3401138 |
Gene Length | 1029 bp |
Protein Length | 342 aa |
Translation table | 11 |
GC content | 64% |
IMG OID | 641548164 |
Product | AraC family transcriptional regulator |
Protein accession | YP_001669276 |
Protein GI | 167034045 |
COG category | [K] Transcription |
COG ID | [COG2207] AraC-type DNA-binding domain-containing proteins |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 29 |
Plasmid unclonability p-value | 0.428431 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 46 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAGGCGCG ATTCCATGGA CAGCATTCGC GGCAGCGCAT TGCTGCAATA TGACCAGCTA CTGGTCGAAC ACGGTGCTGC GCAGCGGGAC TTTCTGGCCC CGCTGCACAT TGCCCCGGAT GTGGTCGGCA ACTACGGCAA GCACCTACCC TACCTGAGCC TGGTGCAACT GTTCGAAGGC AGCGCGCACG CCCTGAGCCT GCCCCGCTTC GGCCTGGAGC TGGCGTTGCG CCAAGGCTCG ACCCTGGTCG GCCCGCTGCG CCACCTGGCC AACTCCGCCC CCACCGTAGG CCACGCCCTG GTGGCGGTAA TCCGTTACAT GCGCCACTAC AGCCCGGCTA TCCACTTTCG CCTGGAACAC CGCGCCGGGC AGGCCATGCT GTTTTTCGAC AACGGCCTGC CGAGTTCCGA ACAGACGCCG CAAATTGTCG AGAAATCAGT GATGGGGGCG CGGCTGCTGA TTGGCGAGCT GCGCGGCGCG CCACTGCGGC CACGGGCGGT GACCTTGCGC CACGCCGCGC TGGGCGATGC CTCGGGCTAC ACACGTTACT TTGACTGCCC GGTGCTGTTC GGCCAGGCCC ACAACAGCCT GGTGCTGGGG GCTGACGTAC TGCAAGAAGC CTGCGTGCAC CATGACGCCG ACCTGCATGC CATCGTCCGC CACTTCCTGG AGAACCAGGC CGTCCCTTGC GACAGCCTGC TGGCCTCGGT AGAGCGCAAG ATCCAGATGC TGCTGCCCGC CCAACGCTGC ACCCTGGAAC AGGTGGCGCT GGCCTTGAAC ATGAATTCAC GCACCTTGCA ACGGCACCTG GCCAGCGATG GTATCGAATT CGAAGGCTAT CTGGACGGTA TTCGCCGCTG CCAGGCACAA CAGATGCTAC GCAAGACCAC CTTGTCTGTC GGGCAGATCG CCAACGAGCT GGGCTATCGC CGTACCACCT CGTTCTGCCG TGCGCATTTG CGCTGGTTCG ATATCACGCC GCTTGAGCAT CGACGGCAAT ACGGCGACCC GGTGATCGCC GCACTTTGA
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Protein sequence | MRRDSMDSIR GSALLQYDQL LVEHGAAQRD FLAPLHIAPD VVGNYGKHLP YLSLVQLFEG SAHALSLPRF GLELALRQGS TLVGPLRHLA NSAPTVGHAL VAVIRYMRHY SPAIHFRLEH RAGQAMLFFD NGLPSSEQTP QIVEKSVMGA RLLIGELRGA PLRPRAVTLR HAALGDASGY TRYFDCPVLF GQAHNSLVLG ADVLQEACVH HDADLHAIVR HFLENQAVPC DSLLASVERK IQMLLPAQRC TLEQVALALN MNSRTLQRHL ASDGIEFEGY LDGIRRCQAQ QMLRKTTLSV GQIANELGYR RTTSFCRAHL RWFDITPLEH RRQYGDPVIA AL
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