Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PputGB1_2897 |
Symbol | |
ID | 5870683 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas putida GB-1 |
Kingdom | Bacteria |
Replicon accession | NC_010322 |
Strand | + |
Start bp | 3251311 |
End bp | 3252516 |
Gene Length | 1206 bp |
Protein Length | 401 aa |
Translation table | 11 |
GC content | 68% |
IMG OID | 641548015 |
Product | major facilitator transporter |
Protein accession | YP_001669127 |
Protein GI | 167033896 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG2814] Arabinose efflux permease |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 30 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 51 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAACGTCG CAAAGGATCC TGCAACCCTG CTACCTGCCA GCACCCTGGA CTTGCGCCCG CTGCTGCTGG CCAACATGGC CTGTACCATG TCGATGATGG CCTTCGTCGC CTTGATCGGC CCGATTGCCC GCCAACTCGG CATGGCCACC TGGCAAGCTG GCGCCGCCGT AACCGTGGCT GGCGTGGTTT GGGTGCTGCT GGCCCGGCCT TGGGGGCGAC TATCGGATCG CCTCGGCCGC CGGCGCATCC TGCTGCTGGG CAGCGCCGGC TTCACCCTGG CTTACTGGCT GCTATGCCTG TTCGTTGAAG GCGCGCTGCG CTGGTTGCCG GGCGCGACCC TGGCGTTCAT CGGCCTGATC GTCGCCCGCG GCTGCATCGG CGCCTTCTAC GCCGCCATCC CAGTGGGCTG CAATGCGCTG ATAGCCGACC ATGTCGAGCC GCAACGCCGG GCCCGGGCCA TGGCCTCGCT GGGCGCGGCC AACGCCGTCG GCCTGGTGGT CGGGCCAGCG CTGGCGGCGC TACTGGCACG GCACAGCCTG AGCCTGCCGT TCCACATCAT GTCGCTGCTA CCGGCCACGG CCTTCCTCGT GCTGCTCTTT ACCCTAAAAC CACAGGCGCT GCCGCACGCC CACGCCCCCA GCCCGGTGCG GCTGAACGAC CCGCGCCTGC GCAGGCCGTT GCTGGTGGCA TTCAGCGCCA TGCTCAGCGT GACCGTGTCG CAGATCATCG TCGGTTTCTT TGCCCTCGAC CGCTTGCATC TGGGCCCCGC CGAAGCGGCC CAGGCTGCCG GCATCGCGCT GACCACGGTG GGCGTAGCGC TGATGCTGGC GCAGGTATTG CTGCGCCAGC TGGAGTGGCC ACCGCTGAAG ATGATCCGGG TAGGTGCCAC GGTATCGGCA CTGGGCTTTG CCTGCGGGTC GCTGGCCACC ACGGCCCCTT GGCTATGGGC TTGCTACTTT GTTGCGGCAG CCGGCATGGG CTTTGTGTTC CCAGCGTTTT CGGCACTGGC AGCCAATGCC ATGCACGCCT CCGAGCAGGG CGCCACAGCC GGCTCCGTGG GAGCTGCCCA GGGCATGGGT GCGGTGATCG GGCCGCTGGC CGGCACCTTG GTATATGCCC TTGATCCGCG CCTGCCATTC TTGGCCGTAG CCGTGCTGTT GCTGCTCGTC GGACTGTGGC CGATGCCACG TGAACAGCGG GTTTGA
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Protein sequence | MNVAKDPATL LPASTLDLRP LLLANMACTM SMMAFVALIG PIARQLGMAT WQAGAAVTVA GVVWVLLARP WGRLSDRLGR RRILLLGSAG FTLAYWLLCL FVEGALRWLP GATLAFIGLI VARGCIGAFY AAIPVGCNAL IADHVEPQRR ARAMASLGAA NAVGLVVGPA LAALLARHSL SLPFHIMSLL PATAFLVLLF TLKPQALPHA HAPSPVRLND PRLRRPLLVA FSAMLSVTVS QIIVGFFALD RLHLGPAEAA QAAGIALTTV GVALMLAQVL LRQLEWPPLK MIRVGATVSA LGFACGSLAT TAPWLWACYF VAAAGMGFVF PAFSALAANA MHASEQGATA GSVGAAQGMG AVIGPLAGTL VYALDPRLPF LAVAVLLLLV GLWPMPREQR V
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