| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PputGB1_2875 |
|---|
| Symbol | |
|---|
| ID | 5870661 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida GB-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010322 |
|---|
| Strand | + |
|---|
| Start bp | 3227931 |
|---|
| End bp | 3228626 |
|---|
| Gene Length | 696 bp |
|---|
| Protein Length | 231 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 641547993 |
|---|
| Product | DNA-binding transcriptional regulator CsiR |
|---|
| Protein accession | YP_001669105 |
|---|
| Protein GI | 167033874 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG1802] Transcriptional regulators |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 34 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 40 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | TTGGAAGCGC TCGCCCCCCG ACAAAACTCA GCATTCAGCG GGTATGAGAG GCTCAAGAAG
GACATCATCC GCGGCGTGTT CAAACCCGGT GAAAAACTGT TGATGAGCGC CCTCAAGGAA
CGCTACGACC TGGGCGTGGG CCCGCTGCGC GAAGCACTGT CACAACTGGT GGCAGAGCAC
CTGGTCAACG CGATAAGCCA GAAAGGCTAC CGGGTGGCGC CCATGTCGCT GGACGAGATG
AACGACATCT ATGATGCCCG CGCCAACCTG GAAGCGATGA TCATCGCCCT GGCCATCGAA
CGCGGCGACG ACGCCTGGGA GGCCTCGGTG CTGGCCCACT CGCACACCCT GGCCAAAGTG
GTGGAGGTGA AAACCCGTGA ACAGCGCCTG GACGTGTGGG ACGAACGGCA CAAGGCGTTC
CATACCGCCA TCGCCTCGGG CTGCGGCTCC AAGCACCTGC TGCAAGCGCG CACCTACCTG
TTCGACCAGG CCGAACGCTA CCGCCATCTG TGGCTGACGC AGACGGTGTT TTCCGAGCAG
GCGCTGGAGC TCAAGCGCCA GGAGCATGCA GCGCTGGTCG AGGTGATTCT CGCCCGTGAT
GCCAAGCGCG CCAGCGCCAT GATGCGCTCG CACCTGATGA CCCCGGTGCC GATCATTGCG
CAGATCATGC ATGCTGAAGG TATCGGCGCA CGCTAG
|
|---|
| Protein sequence | MEALAPRQNS AFSGYERLKK DIIRGVFKPG EKLLMSALKE RYDLGVGPLR EALSQLVAEH
LVNAISQKGY RVAPMSLDEM NDIYDARANL EAMIIALAIE RGDDAWEASV LAHSHTLAKV
VEVKTREQRL DVWDERHKAF HTAIASGCGS KHLLQARTYL FDQAERYRHL WLTQTVFSEQ
ALELKRQEHA ALVEVILARD AKRASAMMRS HLMTPVPIIA QIMHAEGIGA R
|
|---|
| |