| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PputGB1_2797 |
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| Symbol | |
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| ID | 5870583 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida GB-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010322 |
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| Strand | + |
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| Start bp | 3143674 |
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| End bp | 3146130 |
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| Gene Length | 2457 bp |
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| Protein Length | 818 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 641547915 |
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| Product | outer membrane autotransporter |
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| Protein accession | YP_001669027 |
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| Protein GI | 167033796 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG3468] Type V secretory pathway, adhesin AidA |
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| TIGRFAM ID | [TIGR01414] outer membrane autotransporter barrel domain
[TIGR03304] outer membrane insertion C-terminal signal |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 0.0467702 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 25 |
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| Fosmid unclonability p-value | 0.0793019 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCGATGCC ACCGCTTGCT GCTGCCTGTC GCATTGCCGC TACTGACGTT GCCTTTGTTG
GCTCACTCCC AATCCCTGAC GGTTTCAGCC GGTGAAAACC TTGGCGCCCT TGTGCAGACG
AATGCCGCTG ATGAATTTAC GCTCACGGGC GGAACGGTTC AGTCATTGCA GCAAGGCAAT
GGCCAAGACA CATTCAACAT GTCTGGCGGC ACGCTTGGGT CGTTGAATCA AGGCGGTGAC
TTCGACACGT TCAGCATGAC CGGCGGCACC ATCACGGGCG CATTCGAAGA CGGTGACTCG
GCCTTTTTCA AAGGCGGCAG CATTGGCCGA ATAGACCTCA AGCTCGCTGA CAACTTCCTT
GAAATATCCC AGGATCTCGG GGTCGAAACC CTCGTTGTTG GCAATGTTGT CAGCGGGCTT
GGCAACGACA CGATCATTAT GACTGGCGGC ACCATCGGCG GTGATATCAG TACCAGCAGC
GGCGTTGACA AGATAACCAT CAGCGGCGGC ACGCTCAAAG GCGAAATACG GACTGGCAAC
GATGACGATG TGTTTACCTG GACGGGGGGA CAGGTCGGTA AAAGAGTCAT CTTGGAGAAC
GGCAATGACA CAGCCACGGT ACGCACCCTG GACCTCGGCA ACTCAACAGT TACCCTGGAC
GGCGGCACCG GTACCGACAC GTTGACGTTC GAGCAGGCTC AGGTCGGCAA AGGTGCGTTG
TACGTCAACT GGGAGTCCAT CGCCCTCAAG CAAGGCAGCC AGCTTACCCT CAACGACACG
CTGACATTGG GAGACGTGGG CGCCACCCAG CCACGCGTGA TCCCCGCCAC GGGCACCGGC
ACCTTGCAAA TCGATGCAAA TAGCACGCTG ATCAGCCGCC AGGGCAGCAT CGTCAGTATT
CAAGTTGAGA ACAAGGCATC GGTCGTGAAC GCCGGCACCA TCGACCTGAG CAGTGGCAAC
GACGCGCGGG GCCGCCTGAC CCTCCAGGGC GACTACACCG GCAACAACGG CACCCTGCGC
CTGAACAGCG TGCTGGCAGG CGATGACGCA GCTTCCGACC GCCTGGTGGT CAGCCGGGGG
GCCATTGGTG GCTCCACCCA GATGTTCATC AACAACTTCA AGGGTGCAGG TGCGGCAACC
ACGCAAAACG GCATCCAGGT GGTCGAAGCC CGCGATGGCG CTACCAGCAC GGCCACCGCA
TTCGTGCAGA CCCAGACGCT TTTGGCCGGT GCCTTCGACT ACCGGTTGTT CAAAGGGGGC
GTGACGGCAG GTAGCGAAAA CAGCTGGTAC CTGCGCTCCA CCCTGGTCGC GCCACCTGCT
CCGGCTACTG TACCGGAACC CGTGCCGGAA CCTGGCGAAC CTACACAGCC AACCGAACCC
AGCCAGCCAA ACGAACCGGG CACGCCACCG GTGGTCGCCC CAGCCGCCAC TCTACCCGTT
GCTGCGCCAG CGCCCGGCCA GGTCGACCTG CCTGCTCCAG TGCAGGGCGA AAGCCTGCCG
CTGTATCGCC CAGAAGTCCC GGTGTATGCC GCGGCGCCAA GAGGTGCCGC GATCATCGCC
CGTCAGGCAT TAGGAACATT CCACCAGCGC CAGGGTGACC AGCAGTTGCT CAAAGCTGAC
GGCGCCCTGC CCGCCAGCTG GGGCCAGGCC TATGGCGGCG CACTGCGCCA GCAATGGAGC
GGTACGGTCA ACCCGAGCCT GGATGGCGAC CTGTACGGTT TCAAGGTGGG CCAGGACCTG
TATGCCAAGG TGGGCGACAA CGGCTACCGC CAGCATGTCG GCCTGTACGT CAGCCACAGC
CGCCTGGATG CCGACGTCAA AGGTTTCGCC CTGGCCGTGC AGGACCGCCG GGTGGGAGAC
CTCAAGCTCG ATGGCGACAG TGTGGGCGCC TACTGGACGC TGGTTGGGCC GCAAGGCGAA
TACCTGGATA CGGTGCTGCA GTACACCCGC CTGGATGGCC GGGCGCGCTC CGACCGTGGC
GACAAGCTGA ACATCGATGG CCATGCCTGG ACCGCTTCGC TGGAGTCTGG CTACCCTATC
GCCCTGTCCG AACGCTGGAC CGTGGAGCCG CAAGCTCAGT TGATCGCGCA AAAGGTATCG
CTCGACAGCG CCAGCGACAG CGTCTCGCGC ATTAGCCATG ACGCCCAGGT TGAGCTGACC
GGCCGCCTGG GTATGCGTAT GGAAGGTGCG TTCACAGGAA GCAGCGGCCG CCTGTTGCAG
CCCTATGCGC AGGTCAACCT ATGGCACGGC GACGGTGGCC GCGACACCTT GACCTTCGAT
GGGGTAGACA AGATCAAGAC CGACTACCGC TATACCGCGG TGCAACTGGA AAGTGGCGTG
GTGGCGCAGG TCAGCGAAGC ACTGAGCCTG CATGGCGGCG TGCAGTACAC CGCCAACCTG
GACAGCCGCC AGCAGGAAGC CAGCGGCGTG AACCTGGGTG TTCGCTGGCA GTTCTAG
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| Protein sequence | MRCHRLLLPV ALPLLTLPLL AHSQSLTVSA GENLGALVQT NAADEFTLTG GTVQSLQQGN
GQDTFNMSGG TLGSLNQGGD FDTFSMTGGT ITGAFEDGDS AFFKGGSIGR IDLKLADNFL
EISQDLGVET LVVGNVVSGL GNDTIIMTGG TIGGDISTSS GVDKITISGG TLKGEIRTGN
DDDVFTWTGG QVGKRVILEN GNDTATVRTL DLGNSTVTLD GGTGTDTLTF EQAQVGKGAL
YVNWESIALK QGSQLTLNDT LTLGDVGATQ PRVIPATGTG TLQIDANSTL ISRQGSIVSI
QVENKASVVN AGTIDLSSGN DARGRLTLQG DYTGNNGTLR LNSVLAGDDA ASDRLVVSRG
AIGGSTQMFI NNFKGAGAAT TQNGIQVVEA RDGATSTATA FVQTQTLLAG AFDYRLFKGG
VTAGSENSWY LRSTLVAPPA PATVPEPVPE PGEPTQPTEP SQPNEPGTPP VVAPAATLPV
AAPAPGQVDL PAPVQGESLP LYRPEVPVYA AAPRGAAIIA RQALGTFHQR QGDQQLLKAD
GALPASWGQA YGGALRQQWS GTVNPSLDGD LYGFKVGQDL YAKVGDNGYR QHVGLYVSHS
RLDADVKGFA LAVQDRRVGD LKLDGDSVGA YWTLVGPQGE YLDTVLQYTR LDGRARSDRG
DKLNIDGHAW TASLESGYPI ALSERWTVEP QAQLIAQKVS LDSASDSVSR ISHDAQVELT
GRLGMRMEGA FTGSSGRLLQ PYAQVNLWHG DGGRDTLTFD GVDKIKTDYR YTAVQLESGV
VAQVSEALSL HGGVQYTANL DSRQQEASGV NLGVRWQF
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