| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PputGB1_2767 |
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| Symbol | |
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| ID | 5870553 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida GB-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010322 |
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| Strand | + |
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| Start bp | 3103089 |
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| End bp | 3104909 |
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| Gene Length | 1821 bp |
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| Protein Length | 606 aa |
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| Translation table | 11 |
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| GC content | 61% |
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| IMG OID | 641547885 |
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| Product | type VI secretion protein |
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| Protein accession | YP_001668997 |
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| Protein GI | 167033766 |
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| COG category | [S] Function unknown |
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| COG ID | [COG3519] Uncharacterized protein conserved in bacteria |
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| TIGRFAM ID | [TIGR03359] type VI secretion protein, VC_A0110 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.00399932 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 33 |
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| Fosmid unclonability p-value | 0.648894 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCTCGACG AACTGCTGCC CTACTACGAA AAGGAACTGT CGCACCTGCG CTTCCTCGGC
CAGGAGTTTG CTGCGCAGTA CCCGAAAATC GCTTCTCGTT TGCTGATCGA GGGCGACAAC
TGCGAGGACC CGCATACCGA GCGCCTGATC GAGGCGTTCT CGTTCCTTTC TGCGCGGGTG
CACAAGAAGC TCGATGACGA GTTCCCGGAA ATCGTCGAAT CCTTCCTCGA GGTGCTGTAC
CCGCATTACC TGCGCCCGAC CCCGTCCATG TCGATTGCCG AGTTGAGCCT GGGCAGGCAT
GAGAAAGTCA CCGAGGCATA CCACGTGGCG CGCCATACCG AAATGCATGC CAATGCCGTC
GAGGGCGTGG TGTGCAAGTT CCGCACCTGT TACCCCGTAG AGCTGTGGCC GATTGCCGTG
CAACAGGCCT CGTTCGCCGA AATGGAACGC TCGGCATTCA ATGGCCACAG CGCCGACCTG
GTCGCACGCC TGCGTATCCG CCTGACCGCC ACAGGTGATG CCCTGTTCGG GCAGATGGAA
ATGGACCGCC TGCGGTTTTT CCTCGACGGC GAAGCCACGC TGATGCTGCA TCTATATGAG
TTGCTGTTCA ACAACCTGGC CAAGGCCACC CTGAGCTTCC ACGACGAGGG CCGCAGCCGT
GAAGTCGCGC TGCCAGCCGG TGCGCTAAAG GCCGTGGGTT TTACCCGTGA CGAAGGCCTG
GTGGATTACT CCGAGCGCTC GTTCCTGGGC TACCGGCTGC TGCACGAGTA TTTCACCTTC
CCCGACAAAT TCATGTTCTT CGACCTCAGT GGTTTTGCAC GCATCCTGCA AGGCAAGGCT
ATCGAGCAGG TCGAGATCAA TTTCTATTTT TCCGACTACG ACCTCAGCGA GCGCCTGGCG
CGGCTGACGC AGAACATCGG GCGCAACAAT TTCAAGCTCA ACTGCACGCC AATCATCAAT
CTGTTCCGCC AGCAGGCCGA GCCGATCAAG CTGACCCACA CCCAGCACGA GTACCCGGTC
ACGCCTGATA CCCGGCTGCA CAACGCTGCC GAAGTGGTGT CGATCGACCG CGTGCGCCGG
GTGCGCAAAC TTGGCGGCAT CGACCAGGTC ACCACCTGCC TGCCGTTTTT CGAGCCCCGT
GGCGAACAGG ACCCGCACAG CAGCTTCTGG GTCGCCCGTC GGCGCAATCA GGGTGACGCC
ACGGCCATGA GCATCCGCGT GGTCGACCGT GACCTGGAGC TGATCGGCGC CAGCAGCGAC
ACCCTCAGCA TCGGCCTCAC CTGCAGCAAC CGCGATGTGC CGCTGATGCT GCCGTTCGGT
GGCGAGCGTG GCGATTTCAA CATTCCCGCC AACTCGGTAA TCAAGGACAT CCGCTGCCTG
CGCAAGCCCA CTGCCACCGT GCGCGTGCCC TTGGGAAAAG GCTTGATCTG GCGGCTGATC
GCGCACCTGT CGCTGAACCA TATGTCGCTG GTCAGCCAAG GCCGCGAAGT GCTGCTGGAA
CTGCTGTCGC TCTACAACTA CCGCAACGTG TCGGCCATCC GCAAACAGAT CAATGGCATC
AAGGCCATCA GCAGCGAGCC AGTGGTTGCG CGCATCGGCC ATCCGCGGCC GAATTTTGTG
CGGGGCGTAG GCATTACCCT CACCCTCGAC GAGCACCAAT ACACCGGCAG CGGCGTGTTC
CTGTTCGGCA TGGTGCTGGA CCACTTCTTC GGCCAGTACT GCTCGATGAA CAGCTTCACC
CAACTGACCC TGCGTACCCA ACAACGAGAA AAGAGAATCG TCCAATGGCC AGCACGCACT
GGCGATCAGC CCCTGGTCTG A
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| Protein sequence | MLDELLPYYE KELSHLRFLG QEFAAQYPKI ASRLLIEGDN CEDPHTERLI EAFSFLSARV
HKKLDDEFPE IVESFLEVLY PHYLRPTPSM SIAELSLGRH EKVTEAYHVA RHTEMHANAV
EGVVCKFRTC YPVELWPIAV QQASFAEMER SAFNGHSADL VARLRIRLTA TGDALFGQME
MDRLRFFLDG EATLMLHLYE LLFNNLAKAT LSFHDEGRSR EVALPAGALK AVGFTRDEGL
VDYSERSFLG YRLLHEYFTF PDKFMFFDLS GFARILQGKA IEQVEINFYF SDYDLSERLA
RLTQNIGRNN FKLNCTPIIN LFRQQAEPIK LTHTQHEYPV TPDTRLHNAA EVVSIDRVRR
VRKLGGIDQV TTCLPFFEPR GEQDPHSSFW VARRRNQGDA TAMSIRVVDR DLELIGASSD
TLSIGLTCSN RDVPLMLPFG GERGDFNIPA NSVIKDIRCL RKPTATVRVP LGKGLIWRLI
AHLSLNHMSL VSQGREVLLE LLSLYNYRNV SAIRKQINGI KAISSEPVVA RIGHPRPNFV
RGVGITLTLD EHQYTGSGVF LFGMVLDHFF GQYCSMNSFT QLTLRTQQRE KRIVQWPART
GDQPLV
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