Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PputGB1_2603 |
Symbol | |
ID | 5870392 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas putida GB-1 |
Kingdom | Bacteria |
Replicon accession | NC_010322 |
Strand | + |
Start bp | 2923380 |
End bp | 2924168 |
Gene Length | 789 bp |
Protein Length | 262 aa |
Translation table | 11 |
GC content | 55% |
IMG OID | 641547726 |
Product | extracellular solute-binding protein |
Protein accession | YP_001668838 |
Protein GI | 167033607 |
COG category | [E] Amino acid transport and metabolism [T] Signal transduction mechanisms |
COG ID | [COG0834] ABC-type amino acid transport/signal transduction systems, periplasmic component/domain |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 29 |
Plasmid unclonability p-value | 0.426319 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 21 |
Fosmid unclonability p-value | 0.00328337 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGCGGGTAA GAAAAACCAG GATGCTACTT GCATCCAGCG CAGTGGCAGT AATTGCATTG TTCTCTCAGG GCGTGGCGCA GGCCGATGAC CTGCAGGCAG TTCAAGAATC AAAAATACTG CGCGTGGCCA TGAGCGGCCA GTACGCTCCC TTCAGTTTCG CCAACGAAAA GAATGAAATT GTGGGTTTCG ACGCCTCCAT TGGTGAAGCA CTCGCCCAGC GCTTGGGTGT AAAGATAAAA ATCATCACCA CCCCCTTCGA CGGCATTATT GCCGGGCTGT TAGCCAAAAA GTATGACGCC GTCATCGCTT CGATGACCAT TACTCCCGAG CGGCTGAAAG CCGTTGATTT CGTGGGGCCT TATTACCATG CGGGCCGTAC CATCGGTGTA AAGGAAGGCT CTCCGATCAA GGGGCTGGAT GACCTCAAGG ACGTCACCGT TGGCGTTACC TTGGGCGACT CGCATGACAA ATGGGCGCGT GCTCGCGGCA ATCTTAAAGT GCGCACCTAT AAAGGGTTGC CGGAAATGCT GGTCGACCTG GATGCCGGGC GTATCGATGC GGTAGTGATG GACAGCATTC CGGTCATGGT TGCGGTAAAG GAAACCGGTC AGAAAGTGCG CATCATCAAC CTGCCCGACG AGCAGGGTGG CCGTGAAGGC CTCGGCATTG CCATCCGCAG GAACAACCCT GAACTCAAGG CCCAGTTGCA GAAGGCCCTG GACGAGATCC TGGCCGATGG CACTTATAAA GAAATCTCCA TGAGATGGGT GGGTAGCGAC ATCCGCTGA
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Protein sequence | MRVRKTRMLL ASSAVAVIAL FSQGVAQADD LQAVQESKIL RVAMSGQYAP FSFANEKNEI VGFDASIGEA LAQRLGVKIK IITTPFDGII AGLLAKKYDA VIASMTITPE RLKAVDFVGP YYHAGRTIGV KEGSPIKGLD DLKDVTVGVT LGDSHDKWAR ARGNLKVRTY KGLPEMLVDL DAGRIDAVVM DSIPVMVAVK ETGQKVRIIN LPDEQGGREG LGIAIRRNNP ELKAQLQKAL DEILADGTYK EISMRWVGSD IR
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