| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PputGB1_2459 |
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| Symbol | |
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| ID | 5870248 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida GB-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010322 |
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| Strand | + |
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| Start bp | 2752373 |
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| End bp | 2754238 |
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| Gene Length | 1866 bp |
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| Protein Length | 621 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 641547582 |
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| Product | type II and III secretion system protein |
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| Protein accession | YP_001668694 |
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| Protein GI | 167033463 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG4796] Type II secretory pathway, component HofQ |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 28 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 49 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAGTCGT CGAAGCTGTG CAAGCCTGCT CCGTTCCTGC TCGTAGCGCT GTGCGTGGCC
ATTGCCGGCT GCGGTACCAG CGCGGTACGC AAGGACAGCG ACCAGTTGAT GAAAGAGGGC
CAGTACGAGG CCGGCATTGC CCGCCTGGAA GAAGCCCTGC GCGATGACCC ACGCGACACC
GAGCTGAACA TCGCCCTGGC CCACAGCCGT CAGGCGGCAG TCGAGGCGCT GATCACCCAG
GCCGACGCCG ACCGTATCCG CCACGACTTC GCCAATGCCC GCATGGGCTA TGGCCGAGTG
CTGACCCTGG AGCCGAACAA CCGCCGCGCC CAGGAAGGCA TCCGCCAGCT GGAACTGATC
CGCACCCTCG ACGAGCGCGT GGCGCTTGGC CAAGCCGCGC TGCGCCAGGG CGACCTGTTC
GGCGCCGAGC GCTACATGCG CGAAGTGCTG CGCCTGGACC CGCAGAACCA GAAGGGCATG
ACCCTGCGCA GCGACATCGA AAACGTCCAG GCGCGCACAG CACAGCCATA CCCGCAGTTG
CGCAGCAAGC TGGAGCGGCC GGTGACCCTG GAGTTTCGCG ATGCCAACCT GAAGACCATC
TTCGAGGTGC TGTCGCAGGT CGCCGGCATC AACTTCATTT TCGACAAGGA CCTGCGCCCG
GACATGAAAG CCACCATCTT CGTGCGTGAA GTGCGCATCG AAGACGCCGT GGCCCTGCTG
CTGGAGCAGA ACCAGCTGCG CCAGAAGATC GTCAACGACA ACACCGTGAT GGTCTACCCC
GACTCGCCGC AGAAGACCAA GGACTACCAG GAACTGGTCA TGCGCACGTT CTACCTGACC
AGCATCGACG CCAACACCGC GCTGAACATG GTCAAGACCA TGCTCAAGAC CCGCGACGTG
TTCGTCGACG AGCGCCTCAA TACCCTGACC ATGCGCGACA CCCCGGATGC CGTGCGCATG
GCCGAGAAGC TGCTGCAATC GCAGGACCAG TCCAACCCCG AGGTGGTGCT GGAAGTGGAG
GTGATGGAAG TGGCCACCTC GCGCATCCTC GACCTCGGCC TGCAATGGCC CAACACCTTC
GGCGTGCTGA GCAACGACGG CAAACCGGTC AGCGTGCTCG ACCAGCTCAA GGGCATCGAC
TCCAGCCGCA TCAGCATCTC GCCGGCGCCG CAGGCCAAGA TCAACGCTTC GGACAAGGAC
ATCAACACCC TGGCCAGCCC GGTGATCCGC GTCAGTAACC GCGAGCAGGC ACGCATCCAC
ATCGGCCAGC GGGTGCCGAT CATCAGCGCC ACCTCGGTGC CGTCCACCCA GGGCCCGGTG
ATCACCGAAA GCGTCACCTA CCTGGACGTC GGTTTGAAGC TTGAAGTACA GCCCACCGTG
CACTTGAACA ACGAAGTGGC GATCAAGGTG GCGCTGGAAG TGAGCAACGC CACACCGTTG
GAAGCCACCC GCCAGGGCAC CATTCCGGTT CAGGTCGACA CCCGCAACGC GCAAACCAGC
CTGCGCCTGC ACGATGGCGA AACCCAGGTG TTGGCCGGCC TGGTGCGCAA CGACCACAAC
GCCAGCGGCA ACAAAATCCC CGGGCTTGGC GACATCCCCG GCCTGGGCCG GCTGTTCGGC
AGCAACAAGG ACGACATGAG CAAGAGCGAG CTGGTGCTGG CGATCACCCC GCGCATCGTG
CGCAACCTGC CGTACCAGAG CCCGTCGGAC ATGGAATTCT CCACCGGCAC CGAGTCGGCC
ATGCAGGTAC GCCAGATGGC CCCGCTGCCA CCAATGGACG TGCCTGGCAA TGCGCCAACC
ACCGACGCAC CGGTCGTGGA CAGCCAAATG GCGGTCGCCC CGGTCAACGG GAGCCCACGG
CCATGA
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| Protein sequence | MKSSKLCKPA PFLLVALCVA IAGCGTSAVR KDSDQLMKEG QYEAGIARLE EALRDDPRDT
ELNIALAHSR QAAVEALITQ ADADRIRHDF ANARMGYGRV LTLEPNNRRA QEGIRQLELI
RTLDERVALG QAALRQGDLF GAERYMREVL RLDPQNQKGM TLRSDIENVQ ARTAQPYPQL
RSKLERPVTL EFRDANLKTI FEVLSQVAGI NFIFDKDLRP DMKATIFVRE VRIEDAVALL
LEQNQLRQKI VNDNTVMVYP DSPQKTKDYQ ELVMRTFYLT SIDANTALNM VKTMLKTRDV
FVDERLNTLT MRDTPDAVRM AEKLLQSQDQ SNPEVVLEVE VMEVATSRIL DLGLQWPNTF
GVLSNDGKPV SVLDQLKGID SSRISISPAP QAKINASDKD INTLASPVIR VSNREQARIH
IGQRVPIISA TSVPSTQGPV ITESVTYLDV GLKLEVQPTV HLNNEVAIKV ALEVSNATPL
EATRQGTIPV QVDTRNAQTS LRLHDGETQV LAGLVRNDHN ASGNKIPGLG DIPGLGRLFG
SNKDDMSKSE LVLAITPRIV RNLPYQSPSD MEFSTGTESA MQVRQMAPLP PMDVPGNAPT
TDAPVVDSQM AVAPVNGSPR P
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