Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PputGB1_2427 |
Symbol | |
ID | 5870216 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas putida GB-1 |
Kingdom | Bacteria |
Replicon accession | NC_010322 |
Strand | + |
Start bp | 2714683 |
End bp | 2715825 |
Gene Length | 1143 bp |
Protein Length | 380 aa |
Translation table | 11 |
GC content | 70% |
IMG OID | 641547550 |
Product | RND family efflux transporter MFP subunit |
Protein accession | YP_001668662 |
Protein GI | 167033431 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG0845] Membrane-fusion protein |
TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
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Plasmid Coverage information |
Num covering plasmid clones | 26 |
Plasmid unclonability p-value | 0.412114 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 44 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAGCAACT TGCGTGCAAT AGGAATGGCC AGCTGCCTGG CGGCGGCAGT CGCGCTGGCC GGCTGCGGCG AAGCTGAAGC GCCGCCGTCT GCGGCCCACA GTGCCTTTCC GGTCCAGACC GTCACGGTCG CCAGCGAACC CCTGACCTTG GCGGCAACGC TGCCGGGCCG GGTCGAACCC ATGCGGGTGG CCGAGGTTCG CGCCCGAGTG GCCGGCATCG TCCTGCACAA GCGCTTCGAA GAAGGCGCCG ACGTAAAAGC CGGCGATGTG CTGTTCCAGA TAGACCCGGC ACCCTTCAAG GCCGCGCTGG CACGCGCCGA GGCCGACCTG GCCAGGGCCC AGTCGGTCAT GTTCGAAGCC CAGGCGCGGG TACGCCGCTA CGAACCGCTG GTGAAGATCG AGGCAGTCAG CCAGCAGGAC TTCGACACCG CCAGCGCCGA CCTGCGCAGC GGCCAGGCCG CTGTGCGTTC GGCCCAGGCC GATGTCGAGA CCGCGCGCCT GAACCTGGGC TACGCCACGG TCAAGGCGCC GATCTCTGGC CGTATCGGCC GTGCCCTGGT CACCGAAGGT GCGCTGGTGG GGCAGGGCGA CGCCACGCTG ATGGCGCGCA TCCAGCAACT CGATCCGATT TACGTCGACT TTACCCAGTC CGCCGCCGAC GCGCTGCGCC TGCGCCAGGC GCTGAAGGAG GGTGCGCTGG CAGCCGGTGA TCAGCAGGCC CTGACCGCCC AGGTGGAAGG CACCGACTAC GAGCGCCAGG GTGCGCTGAT GTTCACCGAC GTCGCGGTCG ACCGCGGCAC CGGCCAGGTC ACCTTGCGCG GCCGCTTCGA CAACGCCGAC GGCATCCTGC TGCCGGGCAT GTATGTGCGC GTGCGCACCC CGCAAGGCAC CGACAACCAG GCCATCCTTG TGCCGCAGCG CGCCATCCAG CGCGGCAGCG ACGGCGAGGC GCGGGTCATG CTGGTGGGCA TCGGTGGGGT TGCCGAGGCG CGCAGTGTGC GCACCGGTGC CATGCACGGT GCCCGCTGGC AAGTCACCGA GGGCTTGCGC CCAGGTGACC AGGTGATCGT CGGCAGCCCT GCCGGGCTGG CTGCGGGCAT GCCGGTGGTG ACTGCCCCGG CGCAACAAGC CGCAGCACGC TGA
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Protein sequence | MSNLRAIGMA SCLAAAVALA GCGEAEAPPS AAHSAFPVQT VTVASEPLTL AATLPGRVEP MRVAEVRARV AGIVLHKRFE EGADVKAGDV LFQIDPAPFK AALARAEADL ARAQSVMFEA QARVRRYEPL VKIEAVSQQD FDTASADLRS GQAAVRSAQA DVETARLNLG YATVKAPISG RIGRALVTEG ALVGQGDATL MARIQQLDPI YVDFTQSAAD ALRLRQALKE GALAAGDQQA LTAQVEGTDY ERQGALMFTD VAVDRGTGQV TLRGRFDNAD GILLPGMYVR VRTPQGTDNQ AILVPQRAIQ RGSDGEARVM LVGIGGVAEA RSVRTGAMHG ARWQVTEGLR PGDQVIVGSP AGLAAGMPVV TAPAQQAAAR
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