Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PputGB1_2292 |
Symbol | |
ID | 5870081 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas putida GB-1 |
Kingdom | Bacteria |
Replicon accession | NC_010322 |
Strand | + |
Start bp | 2552720 |
End bp | 2553508 |
Gene Length | 789 bp |
Protein Length | 262 aa |
Translation table | 11 |
GC content | 62% |
IMG OID | 641547417 |
Product | extracellular solute-binding protein |
Protein accession | YP_001668529 |
Protein GI | 167033298 |
COG category | [E] Amino acid transport and metabolism [T] Signal transduction mechanisms |
COG ID | [COG0834] ABC-type amino acid transport/signal transduction systems, periplasmic component/domain |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 35 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 37 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGATCGAGC GTTGCTTTCG CCGCGCCTTG CTACTGTTGT GCCTGTTGCC GCTGCCCCTG GCTGCGGTAG CGGATGATGC ATGCCGACGG CTCACCGCGA CCGGCAATCC TGAATACCCG CCGTACTTGT GGCGCGACCC GCAAAACCCC CAGCAATTGG TCGGTGCCAA TGCTGACCTG CTCAAGTACT TGGGCAAGCA GTTGGGGCTG GATATCGAAG TGGTTTACGG CGGGCCGTGG TCGCGAGCCC AGGAAGAGGT GCGCACCGGT CGGATCGATT TGCTGGCCGG GTATTTCCTG ACCGAAGCAC GCCGGCTGCA GATGGACTTC ATTGCCCCGC CATTCCTGCA TACCCCCAGC GTGGTCTGGG TGCGCCAGGA CAATGCCTTT GCCTACCGAC AATGGGCCGA CCTCAAGGGC CACAAGGGCG GCACTCTGGT CAACAACAGC CATGGCCAGC AGTTCGATGA ATACGCCCGG GCCAACCTAA CCCTTGAAGC GGTGCCCAGC GCCCGGCAGG CGTTCGAGAA GCTGATGCAC AAGCGCAGCG ATTACGTGGT GTACGAGCAG TACCCTGGTA TGGCGCTGGC GCGTACCTTG GGCATCGCAG CCACTGTGCA GGTGTTGCAG CCGCCAGTGT CCAGCGAAGG GTTGTACCTG GCGATTTCGC ATGATTCGCC CTGTAACCAG CCGCAGTTGC GTGAGGCGCT GGCGCGGGAA ATGGCGAAGA TAGTTGCCGG AGCGCTGCCC GATCATTTGC TGAAGCAGAA CCTGGAGCGG TGGCAGTAA
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Protein sequence | MIERCFRRAL LLLCLLPLPL AAVADDACRR LTATGNPEYP PYLWRDPQNP QQLVGANADL LKYLGKQLGL DIEVVYGGPW SRAQEEVRTG RIDLLAGYFL TEARRLQMDF IAPPFLHTPS VVWVRQDNAF AYRQWADLKG HKGGTLVNNS HGQQFDEYAR ANLTLEAVPS ARQAFEKLMH KRSDYVVYEQ YPGMALARTL GIAATVQVLQ PPVSSEGLYL AISHDSPCNQ PQLREALARE MAKIVAGALP DHLLKQNLER WQ
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