| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PputGB1_1865 |
|---|
| Symbol | |
|---|
| ID | 5869650 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida GB-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010322 |
|---|
| Strand | - |
|---|
| Start bp | 2099969 |
|---|
| End bp | 2101174 |
|---|
| Gene Length | 1206 bp |
|---|
| Protein Length | 401 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 641546987 |
|---|
| Product | major facilitator transporter |
|---|
| Protein accession | YP_001668104 |
|---|
| Protein GI | 167032873 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG2211] Na+/melibiose symporter and related transporters |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 26 |
|---|
| Plasmid unclonability p-value | 0.418414 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 37 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCGCAGCA ATGAAGACAG CAGCCCCGCC AGGGGCCTGA CGAAAATCCC TCGCAGTGTC
TGGGCACTGG GCTTCGTGTC GATGTTCATG GACATCTCCT CGGAAATGAT CCACGCCCTG
TTGCCCTTGT ACATGGTCAG TGTGCTTGGT GCTTCGGTAG TAGCTGTGGG CTTTATCGAA
GGCATCGCCG AGGCGACTGC ATCGATCACC AAGGTATTTT CCGGTGCTCT CAGCGACCGG
CTGGGCAAAC GCAAGCTGCT GACGGTACTC GGCTACGGCC TGGGTGCGCT GACCAAACCG
GTATTTCCCA TGGCCTCGGG GCTTGAGTGG CTGACGGCGG CACGCTTCGT CGACCGGGTC
GGAAAAGGCA TTCGTGGGGC GCCGCGCGAT GCGCTGGTGG CCGATGTTAC GCCAGCCGAG
TTGCGTGGCG CGGCGTTCGG CCTGCGCCAG GCCCTCGACA CCGTGGGCGC CTTCCTCGGA
CCGTTGTTGG CGATCGTATT GATGTGGCTG ACCGCGAGCC ATTTCCAGAC CGTATTCTGG
GTGGCGGTGA TCCCTGCTTT CGTGGCGGTG TACATCCTCA TCGCCTTCGT TCGCGAACCT
GAAACGCCGG CCACGGGGCG GCCGGTACGC TCACCGTTGG CACTGCACGA ACTGGGGCGC
CTTGGGCCGC CCTATTGGCG CCTGATCGGC CTGGCCACGT TATTCACCCT CGCCCGCTTC
AGCGAGGCAT TCCTGCTGCT GCGTGCGCAA GACATGGGCC TGGCACCTTT GTGGGCGCCG
GCGGTGCTGG TATTGATGGC ACTGGCCTAC TCACTGTCGG CCTACCCCGC CGGGGTGCTG
TCGGACCGGG TGGGGCGCCG TGGCGTGCTG ATGGTCGGGC TGGGTTTGCT GATCACTGCC
GACCTGCTAT TGGCCCTGCT GCCGGGCTGG GCCGGGTTGG CCCTTGGGGT AGCGGCCTGG
GGCTTGCACC TGGGCTTCAG CCAAGGCATT TTCGCGGCCA TGATCGCCGA CAGTGCCCCG
GCCAACCTGC GTGGTACCGC CTTCGGCCTG TTCAACCTGC TGACCGGTAT GGCGCTGCTG
GCGGCCAGCG TAGTAGCCGG GTTGTTGTGG GATGGTGTGG GGTTCCAGGC AACGTTCCTG
GTCGGGGCGG GGTTTGCCGG CGCCACCCTG GCGGGACTGA CGCTAATGAA GGTGACAGGA
TCATGA
|
|---|
| Protein sequence | MRSNEDSSPA RGLTKIPRSV WALGFVSMFM DISSEMIHAL LPLYMVSVLG ASVVAVGFIE
GIAEATASIT KVFSGALSDR LGKRKLLTVL GYGLGALTKP VFPMASGLEW LTAARFVDRV
GKGIRGAPRD ALVADVTPAE LRGAAFGLRQ ALDTVGAFLG PLLAIVLMWL TASHFQTVFW
VAVIPAFVAV YILIAFVREP ETPATGRPVR SPLALHELGR LGPPYWRLIG LATLFTLARF
SEAFLLLRAQ DMGLAPLWAP AVLVLMALAY SLSAYPAGVL SDRVGRRGVL MVGLGLLITA
DLLLALLPGW AGLALGVAAW GLHLGFSQGI FAAMIADSAP ANLRGTAFGL FNLLTGMALL
AASVVAGLLW DGVGFQATFL VGAGFAGATL AGLTLMKVTG S
|
|---|
| |