Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PputGB1_1577 |
Symbol | |
ID | 5869357 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas putida GB-1 |
Kingdom | Bacteria |
Replicon accession | NC_010322 |
Strand | + |
Start bp | 1777326 |
End bp | 1778579 |
Gene Length | 1254 bp |
Protein Length | 417 aa |
Translation table | 11 |
GC content | 63% |
IMG OID | 641546695 |
Product | outer membrane porin |
Protein accession | YP_001667818 |
Protein GI | 167032587 |
COG category | |
COG ID | |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 21 |
Plasmid unclonability p-value | 0.107742 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 34 |
Fosmid unclonability p-value | 0.53028 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGTCCCGTG CTGTGTTCCG TGGGGCCACG TGTGGCCTGC TCTGCGGCTG GCTGCCTGTT GCCGGCGCTG CCGGTTTCGT CGATGACAGC AAGCTCAAGC TTCAACTACG CAACGTCTAC TTCAACGAGA ATTTCCGCGA CGAACACGGC ATGAGTGCAC GTGCTGCCGC TAGCGCCAAA AGCGAGCGGG TGGAGTGGGC ACAGGGTTTT CTGCTGGACT ACCAATCCGG ATTCACACCC GGCGCATTGG GCGTGGGGCT GGACGCCCTC GGGCTGGTGG GTGTCAGGCT GGACTCTGGC CGTGGGCGCA GCGGCACCGG GCTGCTGCCG GTTCATGACG ACGGCCGTGC GGCGGACGAA TTTGCCAGCG CCGGGGTAAC GGCCAAGGCC CGCGTCGGGC AGACTGTGGT CAAGCACGGT ACCTTGCTGC CGAAAACGCC GGTGCTGGTC TACAACGACG CGCGGCTGTT GCCGCAGACG TACGAGGGTA CCCAGCTGAC CAGTACGGAT ATCGACGGGC TGACACTGAC AGCGGGCCAC CTGGACCGCT TCAAACAGCG TGATTCATCG GACAGCACCG GCCTGTACCT GGATGGGTAC GCGGGCGGCA GGTCCGGTGG CTTCAACTTC GCCGGCGCCG ATTATGCCGT CAGCAAACAA CTGCGCCTGA GCTACTTCCA TGGCCAGCTC GAGCACTTCT ACCGGCAGGA CTTCGCCGGC CTGGTACACG AACTGCCGCT GGCGGGTGGT GTGTTGAGCA CTGACCTGCG CTATTTCAAG AGCCGCGACA GCGGTGCCGC CCAGGGCGGC GCAATCGACA ACGACATGTT CAGCGGGCAG ATGGCCTATG CCCATTCGGG CCATACCCTC GGTGCCGGCT ACCAGGTGCT CGACGGTGAG GCAGGGTTGC CTTACATCAG CGGTGCGACG GTGTATTCGT TCAGCAACGT CGGCATCGGC AAGTTCATCG AGGAAGAAGA AAAGACCTGG ATGGCAAGCT ACGCCTACAA CTTTGCGGCA GCAGGCGTGC CGGGCCTGAC CTTCATGGCG CGATACCTGA GTGGCGATAA TGGCCGCTCG GGTGCCGAGG GCATCAAAGA GTGGGAACGT GACGCCGAGC TTGCCTACGT GGTGCAGGGC GGGCCGCTGA AAGGTTTGGG TGTGAAGCTG CGCAACTATA TCTATCGTTC GGATTTTGCC CGCGGGCGCG ACAGCAATCG CTTGTACCTT ACCTACGATA TCGCCATCTG GTGA
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Protein sequence | MSRAVFRGAT CGLLCGWLPV AGAAGFVDDS KLKLQLRNVY FNENFRDEHG MSARAAASAK SERVEWAQGF LLDYQSGFTP GALGVGLDAL GLVGVRLDSG RGRSGTGLLP VHDDGRAADE FASAGVTAKA RVGQTVVKHG TLLPKTPVLV YNDARLLPQT YEGTQLTSTD IDGLTLTAGH LDRFKQRDSS DSTGLYLDGY AGGRSGGFNF AGADYAVSKQ LRLSYFHGQL EHFYRQDFAG LVHELPLAGG VLSTDLRYFK SRDSGAAQGG AIDNDMFSGQ MAYAHSGHTL GAGYQVLDGE AGLPYISGAT VYSFSNVGIG KFIEEEEKTW MASYAYNFAA AGVPGLTFMA RYLSGDNGRS GAEGIKEWER DAELAYVVQG GPLKGLGVKL RNYIYRSDFA RGRDSNRLYL TYDIAIW
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