| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PputGB1_1456 |
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| Symbol | |
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| ID | 5869226 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida GB-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010322 |
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| Strand | - |
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| Start bp | 1627462 |
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| End bp | 1632531 |
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| Gene Length | 5070 bp |
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| Protein Length | 1689 aa |
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| Translation table | 11 |
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| GC content | 60% |
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| IMG OID | 641546565 |
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| Product | YD repeat-containing protein |
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| Protein accession | YP_001667699 |
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| Protein GI | 167032468 |
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| COG category | |
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| COG ID | |
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| TIGRFAM ID | [TIGR01435] glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 28 |
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| Fosmid unclonability p-value | 0.368139 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGCAGCA TGGCCGCGCA CTCCAATGCC AATAACTTCG CCGTCGAAAA GCGTGTCGAC
CCACGTACCG GCCAATATGG GCTGAGCATC GCGATTCCTG AATTGGTTGC CGACAGCGGC
GCCGGTGCCA GTTTCTCGCT AAACCTGGCC TACAACTCAA TGGCCGCGGG CGATGTCGGG
TATGGCGAAG GATGGGATTT GAACCTTTCC CGCTTTGTCG AGCATGCCTA CCCTGAAGGC
GGTGGCGCCC TGTCGCTGTT TACCGGCGAA CAGTTCACCG TGGACGGCAT CGAGAGCATC
AGCGAGAAAA AACTCGATAC CTTCCACTTC CACAAGGATG GCGAAGGGCG CTTCCGCGTC
GTGCACCGTA GCGGCGTGGT CGAAATACTC GAAGAGATGG GCGCGGGCGC ACAGCGTGCG
GCCTTGCCGA CACGCATCTA CGCACCGTCC GGGCACTGGC TCGAACTCAC CTACGCAAGC
AACTCGGTTA CCCCGGGTTG GTTTTGCTTG ACGCACGTAC ACAGCGGGCA TCCCGATGGC
GCAGGTAAAG GCCGCCTGTT GCTGCAGGTC GCCTACGGCG GCACGACTGA GTTCACCCTG
TACCCTGGCG CCGCTGATGT GCAAGCCAGC CAGGTACTGA AGTTCAAGGG GCGACAACTG
CAGAATGTGG TACTGCCCGA CCAGACTCAG TGGCAATTCG ACTACCAGAC CGTGCATGGG
CAGACCTGCG TGACCAAAGT GGTCTCGCCC ACAGGCGCTG TAGAGCACAT CGAATACGGC
ATCGACGGGG ATCCTGGCCA TGCATTGCCG GGCGTCGACA AGAAGCTGCC ACGGGTCAAA
CGCCATCGCG TTCAGCCAGG GCAAGGCCAG CCGGAAATGC GCACGGACTA TGACTACTCC
ACTGAAAACT TCATGGGTAA TGGCAGCACC ATTACCTGGC GCAACAACGG GCGCGACAAT
TTGTACGACG TTGTCGACCC AGGCTACAGC TATTGGTGCA AGACCACCCA GCGTTGCCCG
GGCCAGGCTG ACCGCACCGT CACCACCCAC TACGACCGCT TCCACCGCAG CACCCAGGAA
ACCCGCGCTC AGGGCAAACA GGTCACCCGA ACCCAAATCG TCTATCACGG CGAGTTGGGC
GACCCCTTCA GCAAACAGCC GCCCATTTAC CTGATGGCGA ATACGGTAAC GACCTCTTGG
GAAATGGAGG ACGATGCCAA CAAAAAGCGC TTTGAAACCA TCACCACCGA ATACGATCGA
GAGGGTAACC TCACCAAGGA AATTCAGCAG GATGGCGGGT ACACCGTGCT GGAGTACTAC
GACGCCAACG GCGAACCTGG CAAATGCCCC GCTGATCCGA ACGGCTTCAA GAAGCATGTA
AAAAGCCAGA CGGTCTACCC GAGCACGCTT GCCAACGTGG TAGAAGGCGC CACCGTGCTA
CGCACCGATT TTACCTATGG TGCGCTGGGG ACCCTGCAGG GTCGCATCGA CCTGCCCGAA
CACGGCGAAA TCGCCTCGAC ATGGCTGGCC ATCGAACAGG AAGTGCTGAC GGACGCCGCC
AACCCGCAGG CCCTGCGCGC CCTTAGCACG GTCAAACGGA CCTACCTCAG CAGCCCCAGC
AATGCTCACT ACCACGGCCG CATGAGCAAA CGTGAAACTA CACTGCATGC CGGGCATGAT
GGGACGAAGC TGGGTAAAGT GCTGGCCGAC ACCACCACAA CGCTTGAGTG GAAGTTCAGC
CTCTCCTCGC ACAAGGCGCT GGGCGATGTC CTGCAGACCA CCCAGACGAC CATCGGGCAT
AACCTGAGCC AGAAGGTTTC TAAACAGAGC CAGCATCCGC TGACAGGCCA GGTGCTGGAA
AACCTCGACA TTCACGACAC GGTCACGCGC TTCAGCTATG ACACAAGCAA TCGGCTGACC
AGCGAAACCT CCGCACCGGA CGATGACGAA AAGCGCGCCA CTGTCCGCTA TCGCTATGCC
GTGTCGGCTG AGCAGAACCT TCAGGAAACC GAAGACAACC TGGGCGTAAT CAGCCGCGTG
TTGTTCGACG GCCTCAACCG CATCATCAAG GAAGAGCGGG TATGCGAGGC GGTGGCCTCG
AAGGCCAGGC AACAACAGAC GTATCAGGTT TATTCCGCCG CTTACAACGC CTTCGGCCAG
CTGGAAAACG AAACCACCTA CGACCAACTG CCCGACCGCG AACTGGCCTT GACCAGCCAG
CATCGATACG ACAACTGGGG TAACCGTTGC GCTACCGTGC GCCCGGACGG GGTGACCGTG
TTCACCGACC GCTCCCCGTT CGGCGCCGAG GGGGATATCG TCACCACCTG GGAGGAGTAC
CCGGACCAAC CCGGTGTGCG AAATAGCCAG AGCACCACCT CCTTCAATCG CTTCGACAAA
CCAGAACAGG TGCAAACGCT GGATGAGCAC GGTGCCTCGG CATCGACACG CGCCTACAGC
TATGACGGCT TTGGCCGCAG CGTCGCAGAA ACCTATACCT TCGGCGTGCC GGCAAGCGGC
AAGCACACCG CACGTGCCGA ACACAAACGC ACCACCGGTT ACAGGTACGA CATCTGGGGG
CGCATGCAGC GCACCGATCG CGCGGACGGC TCGGCGTTGA GCCGGGAGTT TGCCCACCAC
AGCACCGATG AACTGGCGAC CACCCTGCTG CTGCACCCGC AACGCAACGA TAAAGGGCGT
TCGGTGTGTG GACGCGAGTT CGACGATATC GACCGCCTGG TCAAAGTGAC CGTTGGCCGC
CACCAGGAAA CGCGCGAGTA CAGCGGCTCA CAGTTGCTGC CAGAGAAGCG AATCATGGGC
TCTGGCCGCA CGTTCAACTA CGAGTACGAC CTGGCGGTCG GCACCGCGCC AACACGTATC
ACAGCGGGGA AAAACCAGAA GCCTTCCAGC TTCAAGTACA GCATGGCCTC CGCAGCCATT
ACCGAAGCGC AGAACGAGCA AGGTACACGC AGCTACAGCT ACACCGACCA GGGTTACCTG
CTGAGTGAAA GCTGGGCAGA CAAACAATCG GGCGATGTCT ACACGCGCGA CTTCGTCTAT
TCGTTGCAAG GGCGCATGCT GACGTGCAGC GACAGCGACA ACAGCCGAAA AGCATACGAA
TACGATGAAC TTGGCAGGCT GCACTCGATC ACCCAAGGCA CGCTGCAAGC GGTATTCACT
TACAACAGTG CAGGCCTGTT GCATACCACG CTGACCACCA ACAACGCCGA GGCCGCCAAC
CCGCAGAAAC TGCTGTGCAC CCAGGCCTAT GACCACCGCG GCCGGGAAAC GTCGCGCACC
CTCAAGCTGA GCCGGCTTGA CACCACCCTC GATGAGCGCG CGCTCGAACA AGTGTGGCGC
GACGACAACA TGCTGCACAG CCGCACGCTG ATCAAAGCCG GTACGGCGGT GCTGACGGAG
CGCTTTGATT ACGATGACCG TGACCGCTTG TACAACCACA GGTGTGAAGG CAGCGCGCTG
CCTACCAACA GCAAGGGCCG TGCAATCACC AACCAGGCGT TTGAGTTCGA CGCGTACGAC
AATATCTACC TTTGCCGCAG CGAGTTCGCG GATGGCGAAG TCGACGAAGC GTTCTACGAA
TACTTCGAAG ATTTACCGTT CCAGCTGAAA AGCGTAAGCC ATACGCTGAC AGCCGATTAC
CCCGCTTTGG TGAAGTTCAG CGAGGACGAT TACGACGCCG ATGGCAACAT GCTCAAGGAC
GAGCAGGGCA ACCGCCTGGT GTACGACGAG GATACCGGCC AACTGGCCAG CGCTGCGGCA
CCGGGCGGCA CGGCCCTGGC CAACTTCCGC TATGACGGCC ACGGGCAACT GCTGGGCGTG
CGCCACGGTG CGCAGGCCGA GGAGCAACGG CGTTACGAGG GCTATCGGGT CAGCAGCACC
TTGCGCGATG GCTTGCTCAC CGAGTACCTG TTTGCAGGCG ACTCCCCGCT GGGGCTGCAA
CAGTCGGGCA AAAGCAACGA GACACGCCTG TACATGGCCA GCAACAACAA CAGCGTCATC
GGCGAATGCG CGGCCAATGA TGAGGTGCAT GAAGCCAACT ACAGCGCCTA TGGGGAGGTG
CAGGAAGGCA AGCTGCTGGG CCTGCTGGGC TTCAATGCCG AAGCGCGCGA GCAGGCACTG
GGCTGGTACC TGCTGGGGCG CGGCTACCGT GCCTACAACC CCAGCCTGAT GCGCTTCCAT
AGCCCGGATA ACCTGGACCC TGAACTGGCG GGCATCAACC CATACGTGTA CTGCCTGGGC
AACCCGGTCA TGTGGCAGGA CCCTACCGGG CATTACAGCC GCGGCTGGGG CTCGAACGAT
GACCCGGTGA AAGAGAAGCA GAAGCGCGGG GCTGAGTTCT GGCTGAACAT TGGCGTTTTG
GTAATGAACA TAGGCTTGAC CATTGGCTTT GCCGTGATGA CCGCAGGTGC CGCCACCCCG
CTCGTCATTG GCGTACTGGC GGTAGGTATC ACCGCAACGC TTGCATCGGC GGCTACACAG
GTTGCCGCGG AGTTTGTGAA AGACCCGGAA AAGAAAAAGA AATTGGGCAT CGCGTCTATG
TCACTGTCCA TCATCGGCAC GATGACGTTG ACGGCAGGGA TGGTCAAGGC AGGGTTCGAC
AAACGTGCTG CGGCCAGGAG GCAAAGCGTT GCCGAAGTGG GGGATGCTGG GGGTGCCGGT
GACGGGGGCC TACGGCGTAA CAGCACAAGG AGCAACGGGG CCCAAACAGA TGACATTTCA
CCAGTAGAGG ACAATTTGCC AGCGGACATA AATCAGCCGT CTGCGCGCTC ATCGAGCGCG
GATCGTAATC CACCTCCAGC TCCAGCTTTG CCACAACGTG CCGCACTTGA ACCAACCCCT
GACTACGACA GATCACCACG TGGCTCATTG ATCACGGTTA AGATGGAGCA AACGGACATC
ATGGGTGTTC CCTTGGCTCC AATTAGTAGC TCCAGACTTC TCGCGGTCAC CGGGACTAGG
GTGAAATCAG CCATTCCAGG AGGGGCACGT ACTAACTCCT TCGCTACTCC AGAAGCTGCC
CAGGCGTTTG CTAACACGCT TCAAAAATAA
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| Protein sequence | MSSMAAHSNA NNFAVEKRVD PRTGQYGLSI AIPELVADSG AGASFSLNLA YNSMAAGDVG
YGEGWDLNLS RFVEHAYPEG GGALSLFTGE QFTVDGIESI SEKKLDTFHF HKDGEGRFRV
VHRSGVVEIL EEMGAGAQRA ALPTRIYAPS GHWLELTYAS NSVTPGWFCL THVHSGHPDG
AGKGRLLLQV AYGGTTEFTL YPGAADVQAS QVLKFKGRQL QNVVLPDQTQ WQFDYQTVHG
QTCVTKVVSP TGAVEHIEYG IDGDPGHALP GVDKKLPRVK RHRVQPGQGQ PEMRTDYDYS
TENFMGNGST ITWRNNGRDN LYDVVDPGYS YWCKTTQRCP GQADRTVTTH YDRFHRSTQE
TRAQGKQVTR TQIVYHGELG DPFSKQPPIY LMANTVTTSW EMEDDANKKR FETITTEYDR
EGNLTKEIQQ DGGYTVLEYY DANGEPGKCP ADPNGFKKHV KSQTVYPSTL ANVVEGATVL
RTDFTYGALG TLQGRIDLPE HGEIASTWLA IEQEVLTDAA NPQALRALST VKRTYLSSPS
NAHYHGRMSK RETTLHAGHD GTKLGKVLAD TTTTLEWKFS LSSHKALGDV LQTTQTTIGH
NLSQKVSKQS QHPLTGQVLE NLDIHDTVTR FSYDTSNRLT SETSAPDDDE KRATVRYRYA
VSAEQNLQET EDNLGVISRV LFDGLNRIIK EERVCEAVAS KARQQQTYQV YSAAYNAFGQ
LENETTYDQL PDRELALTSQ HRYDNWGNRC ATVRPDGVTV FTDRSPFGAE GDIVTTWEEY
PDQPGVRNSQ STTSFNRFDK PEQVQTLDEH GASASTRAYS YDGFGRSVAE TYTFGVPASG
KHTARAEHKR TTGYRYDIWG RMQRTDRADG SALSREFAHH STDELATTLL LHPQRNDKGR
SVCGREFDDI DRLVKVTVGR HQETREYSGS QLLPEKRIMG SGRTFNYEYD LAVGTAPTRI
TAGKNQKPSS FKYSMASAAI TEAQNEQGTR SYSYTDQGYL LSESWADKQS GDVYTRDFVY
SLQGRMLTCS DSDNSRKAYE YDELGRLHSI TQGTLQAVFT YNSAGLLHTT LTTNNAEAAN
PQKLLCTQAY DHRGRETSRT LKLSRLDTTL DERALEQVWR DDNMLHSRTL IKAGTAVLTE
RFDYDDRDRL YNHRCEGSAL PTNSKGRAIT NQAFEFDAYD NIYLCRSEFA DGEVDEAFYE
YFEDLPFQLK SVSHTLTADY PALVKFSEDD YDADGNMLKD EQGNRLVYDE DTGQLASAAA
PGGTALANFR YDGHGQLLGV RHGAQAEEQR RYEGYRVSST LRDGLLTEYL FAGDSPLGLQ
QSGKSNETRL YMASNNNSVI GECAANDEVH EANYSAYGEV QEGKLLGLLG FNAEAREQAL
GWYLLGRGYR AYNPSLMRFH SPDNLDPELA GINPYVYCLG NPVMWQDPTG HYSRGWGSND
DPVKEKQKRG AEFWLNIGVL VMNIGLTIGF AVMTAGAATP LVIGVLAVGI TATLASAATQ
VAAEFVKDPE KKKKLGIASM SLSIIGTMTL TAGMVKAGFD KRAAARRQSV AEVGDAGGAG
DGGLRRNSTR SNGAQTDDIS PVEDNLPADI NQPSARSSSA DRNPPPAPAL PQRAALEPTP
DYDRSPRGSL ITVKMEQTDI MGVPLAPISS SRLLAVTGTR VKSAIPGGAR TNSFATPEAA
QAFANTLQK
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