Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PputGB1_0769 |
Symbol | |
ID | 5868528 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas putida GB-1 |
Kingdom | Bacteria |
Replicon accession | NC_010322 |
Strand | - |
Start bp | 877584 |
End bp | 879305 |
Gene Length | 1722 bp |
Protein Length | 573 aa |
Translation table | 11 |
GC content | 64% |
IMG OID | 641545869 |
Product | TPR repeat-containing protein |
Protein accession | YP_001667015 |
Protein GI | 167031784 |
COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG5010] Flp pilus assembly protein TadD, contains TPR repeats |
TIGRFAM ID | [TIGR02996] repeat-companion domain TIGR02996 |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 32 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 47 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGAACAAAC CATACGCATT GCTGCTTGCC TTCGCCCTGC TCCAGGGCTG CCAGAGCCTG GCCCCGCAAA AAGCCGAGCC TCCCGTCGCC GAAGCCGGCA AGGGCGAGGC GGAAAAGCCC GTGGTGTATG GCTCGTTCAA GCAGGACACA CTCTATAGCC TGTTGGTAGC CGAGCTGGCC GGCCAGCGCA ACCGCTTCGA CATCGCCCTG GCCAACTACA CCGACCAGGC GGCAAAAACC CAGGACCCTG GGGTTTCCGA GCGCGCCTAC CGCATTGCCG AATACCTCGG CGCTGACGAG CCGTCGCTGG ACAATGCATT AGTCTGGGCC CGTAACGACC CGCAGAACCT CGACGCCCAA CGTGCCGCCG CCATCCAACT GGCCCGCGCT GGCCGCTATG ACGACTCCAT GGCCTACATG GAAAAGGTTC TGCAGGGCCA GGGCGACACC CACTTCGACT TCCTCGCCCT GTCTGCGGCC GAAACCGACC AGAGCACCCG CGACGGCCTG CTGCAAAGCT TCGAGCGCCT GCTGGTGAAA TACCCTGATA ACGGCCAACT GGTATTCGGC AAGGCCTTGT TGCTGAATCA GGACGGCAAG GCCGAAGAAG CCCTGGAGCT GCTCGAATCG CACCCGGCTC AAAACGGCGA AATTGCCCCG ATCCTCCTGC GCGCTCGCCT GTTGCAGGCC CTGGACCGTG GTCCGGAGGC TCTGCCACTG CTGCGCGGCG CAATCCGCGA CAACCCGGAC GACAAACGCC TGCGCCTGAC CTACGCCCGC ACCCTGGTCG AACAGGACCG CATCGCCGAT GCCAAGGGCG AGTTCCTCAG CCTGGTCCAG CAATACCCCG ATGATGACGA ACTGCGCTAC TCGTTGGCCT TGGTGTGCCT GGAGAACAAA GACTGGGATG AAGCCGAAGG CTACCTGCAG GAATTGATCG AGCGTGAGAG CAACGTCGAC GCCGCACACC TGAACCTGGG CCGCATCCGC GAGGAGCGCC ACGACCCTGC TGGCGCCCTG CGTGAGTACG CCCTGGTCGG CCCTGGCCCC GACTACTTGC CGGCACAACT GCGCCAGGCC GACATCCTGA TCGCCAACGG CCGCAGCAGC GAGGCCTCGC GCCTACTTGC CGAAGCCCGC AAAGCCCAGC CAGACTACGC CATCCAGCTG TACCTGATCG AATCGGAAAG CTACAGCAAC AACAACAAGG ACGCCCAGGC CAGCCAGGTG CTGCAGCAAG CCATCCAGCG CTACCCGGAC GACCTCAACC TGCTGTACAC CCGCGCCATG CTGGCCGAAA AGCGCGACGA CCTGGCGCAA ATGGAGAAAG ACCTGCGCGC CATCATCGCC CGCGAGCCAG AAAACGCCAT GGCCCTGAAC GCCCTGGGCT ACACCCTGGC CGACCGCACC ACTCGCTATA CCGAAGCCAA GGCACTGATC GACAAAGCCC ACCAGCTGAC CCCGGACGAC CCGGCAGTGC TCGATAGCCT GGGCTGGGTC AGCTACCGCC TGGGCAACCT CGACGCAGCG GAAACCTACC TGCGCCAGGC CTTTGCCAGC TTCCCCGACC ACGAAGTGGC CGCTCACCTG GGCGAAGTGC TGTGGGCCAA TGGCAAGCGC CGTGAAGCCC GCCAGGTCTG GGCGAAGGGC TTCGAAGCCC AGGCCGACAG CCCCATCCTG CGCAAGACCA TTTTGCGCCT GACCGGATCC GAGACTCTTT AA
|
Protein sequence | MNKPYALLLA FALLQGCQSL APQKAEPPVA EAGKGEAEKP VVYGSFKQDT LYSLLVAELA GQRNRFDIAL ANYTDQAAKT QDPGVSERAY RIAEYLGADE PSLDNALVWA RNDPQNLDAQ RAAAIQLARA GRYDDSMAYM EKVLQGQGDT HFDFLALSAA ETDQSTRDGL LQSFERLLVK YPDNGQLVFG KALLLNQDGK AEEALELLES HPAQNGEIAP ILLRARLLQA LDRGPEALPL LRGAIRDNPD DKRLRLTYAR TLVEQDRIAD AKGEFLSLVQ QYPDDDELRY SLALVCLENK DWDEAEGYLQ ELIERESNVD AAHLNLGRIR EERHDPAGAL REYALVGPGP DYLPAQLRQA DILIANGRSS EASRLLAEAR KAQPDYAIQL YLIESESYSN NNKDAQASQV LQQAIQRYPD DLNLLYTRAM LAEKRDDLAQ MEKDLRAIIA REPENAMALN ALGYTLADRT TRYTEAKALI DKAHQLTPDD PAVLDSLGWV SYRLGNLDAA ETYLRQAFAS FPDHEVAAHL GEVLWANGKR REARQVWAKG FEAQADSPIL RKTILRLTGS ETL
|
| |