| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PputGB1_0572 |
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| Symbol | |
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| ID | 5868318 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida GB-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010322 |
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| Strand | - |
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| Start bp | 645434 |
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| End bp | 647329 |
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| Gene Length | 1896 bp |
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| Protein Length | 631 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 641545660 |
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| Product | 1-deoxy-D-xylulose-5-phosphate synthase |
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| Protein accession | YP_001666819 |
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| Protein GI | 167031588 |
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| COG category | [H] Coenzyme transport and metabolism
[I] Lipid transport and metabolism |
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| COG ID | [COG1154] Deoxyxylulose-5-phosphate synthase |
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| TIGRFAM ID | [TIGR00204] 1-deoxy-D-xylulose-5-phosphate synthase |
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Plasmid Coverage information |
| Num covering plasmid clones | 32 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 36 |
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| Fosmid unclonability p-value | 0.888062 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCCCACGA CGTTTCAAGA GATCCCCCGC GAACGCCCGG TCACGCCGTT GCTCGACCGC
GCTGACACGC CTGCCGGCCT GCGCCGGTTG GCCGAAGCCG ACCTGGAGAC CCTGGCCGAC
GAATTGCGCC AGGAACTGCT CTATACCGTG GGGCAGACCG GTGGGCACTT TGGTGCCGGT
CTGGGCGTGA TCGAGCTGAC CATCGCCCTG CACTACGTGT TCGACACCCC GGACGACCGG
CTGGTGTGGG ACGTGGGCCA CCAGGCCTAC CCGCACAAGA TCCTCACCGG GCGCCGTAAC
CGCATGCTCA GCCTGCGCCA GAAGGACGGC ATCGCCGCCT TCCCGCGCCG CAGCGAAAGC
GAGTACGACA CCTTTGGCGT CGGCCACTCC AGCACCTCCA TCAGCGCCGC GCTGGGCATG
GCCATTGCCG CCCGTCTGCA AAACAGTGCA CGCAAGTCGA TCGCGGTGAT CGGCGATGGC
GCGCTGACCG CCGGTATGGC CTTCGAGGCG TTGAACCACG CCCAGGAGGT CAACGCCGAC
ATGCTGGTGA TCCTCAACGA CAACGACATG TCGATTTCGC GCAATGTCGG CGGCCTGTCC
AACTACCTGG CCAAGATCCT CTCCAGCCGC ACCTACGCGA GCATGCGCGA AGGCAGCAAG
AAAGTGCTGT CGCGCCTGCC AGGTGCCTGG GAAATCGCCC GCCGCACCGA GGAGTACGCC
AAGGGCATGC TGGTGCCAGG TACGCTGTTC GAAGAGCTGG GCTGGAACTA CATCGGCCCG
ATCGACGGCC ACGACCTGCC GACCATGATC GCCACCTTGC GCAACATGCG TGACCTGAAG
GGCCCGCAGT TCCTGCACGT GGTGACCAAG AAGGGCAAGG GCTTCGCCCC GGCCGAGGTC
GACCCGATCG GCTACCACGC CATCACCAAG CTGGAGCCAG CCGACAAGCC AGCCGCGCCG
AAGAAAGTCA GCGGCCCGAA ATATTCCGCC GTGTTCGGCC AGTGGCTGTG CGACATGGCC
GCCGCCGATA ACCGCCTGGT GGGCATTACC CCGGCGATGA AGGAAGGCTC GGACCTGGTC
GACTTCAGCG AACGCTACCC GCAACGCTAC TTCGACGTGG CCATCGCCGA GCAGCACGCC
GTGACCCTGG CGGCCGGCAT GGCCTGCGAG GGCAGCAAGC CGGTGGTGGC GATCTACTCC
ACCTTCCTGC AGCGTGCCTA CGACCAGCTG ATCCACGACG TGGCCGTGCA GAACCTCGAC
GTGCTGTTCG CCATCGACCG CGCCGGCCTG GTCGGCGAAG ACGGCCCGAC CCACGCCGGC
AGCTACGACC TGTCGTACCT GCGCTGCATT CCGGGCATGC TGGTGATGAC GCCTAGCGAC
GAGAACGAGC TGCGCAAGAT GCTCAGCACC GGCCACCTGT ACAACGGCCC AGCGGCCGTG
CGCTACCCGC GTGGCACTGG CCCGAACGCG CCGATCAGCG GTGACCTGCA GCCACTGGAA
ATCGGCAAGG GCGTGGTTCG CCGCCAAGGC GAGAAAATCG CCCTGCTGGT GTTCGGCGTG
CAACTGGCCG AGGCCATGCA GGTGGCCGAG CAGATCAACG CCACGGTGGT CGACATGCGC
TTCGTCAAGC CGCTGGACGA GGCCTTGGTG CTGGAGCTGG CTGGCAGCCA CGAACTGCTG
GTGACCATCG AAGAGAACGC CATCATGGGT GGTGCGGGCG CTGCCGTGGG TGAGTTCCTG
GCCAGTCAGG CGGTGCTCAA GCCGCTGCTG CACCTGGGGC TGCCGGATAT CTATGTCGAG
CACGCCAAGC CTGCGCAAAT GCTGGCAGAG TGCGGGCTGG ATGCAGCCGG GATCGAGGCT
TCGGTGAAGG CTCGCATGGC CAAGCTCGGG CTGTAA
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| Protein sequence | MPTTFQEIPR ERPVTPLLDR ADTPAGLRRL AEADLETLAD ELRQELLYTV GQTGGHFGAG
LGVIELTIAL HYVFDTPDDR LVWDVGHQAY PHKILTGRRN RMLSLRQKDG IAAFPRRSES
EYDTFGVGHS STSISAALGM AIAARLQNSA RKSIAVIGDG ALTAGMAFEA LNHAQEVNAD
MLVILNDNDM SISRNVGGLS NYLAKILSSR TYASMREGSK KVLSRLPGAW EIARRTEEYA
KGMLVPGTLF EELGWNYIGP IDGHDLPTMI ATLRNMRDLK GPQFLHVVTK KGKGFAPAEV
DPIGYHAITK LEPADKPAAP KKVSGPKYSA VFGQWLCDMA AADNRLVGIT PAMKEGSDLV
DFSERYPQRY FDVAIAEQHA VTLAAGMACE GSKPVVAIYS TFLQRAYDQL IHDVAVQNLD
VLFAIDRAGL VGEDGPTHAG SYDLSYLRCI PGMLVMTPSD ENELRKMLST GHLYNGPAAV
RYPRGTGPNA PISGDLQPLE IGKGVVRRQG EKIALLVFGV QLAEAMQVAE QINATVVDMR
FVKPLDEALV LELAGSHELL VTIEENAIMG GAGAAVGEFL ASQAVLKPLL HLGLPDIYVE
HAKPAQMLAE CGLDAAGIEA SVKARMAKLG L
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