| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PputGB1_0537 |
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| Symbol | |
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| ID | 5868283 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida GB-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010322 |
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| Strand | + |
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| Start bp | 614507 |
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| End bp | 616429 |
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| Gene Length | 1923 bp |
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| Protein Length | 640 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 641545625 |
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| Product | selenocysteine-specific translation elongation factor |
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| Protein accession | YP_001666784 |
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| Protein GI | 167031553 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG3276] Selenocysteine-specific translation elongation factor |
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| TIGRFAM ID | [TIGR00231] small GTP-binding protein domain
[TIGR00475] selenocysteine-specific elongation factor SelB
[TIGR00485] translation elongation factor TU |
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Plasmid Coverage information |
| Num covering plasmid clones | 22 |
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| Plasmid unclonability p-value | 0.82907 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 35 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGATCGTTG GTACAGCCGG CCACATTGAT CACGGCAAGA CCGCGCTGCT GCAGGCGTTG
ACCGGCCAGG CCGGTGACCA ACGCCAGGAA GAGCGCGCCC GTGGCATGAC CATCGACCTT
GGTTATCGCT ACGCGGCGTT GAGTGAAGGC GCGCCGTTGA CCGGCTTCAT CGATGTGCCG
GGCCACGAGC GTTTTATCCA CAACATGCTG GTCGGCGCCC ATGGCATCGA CTTGGTGCTG
TTGGTCGTGG CTGCCGACGA TGGGGTCATG CCGCAGACCC GTGAGCACCT GGCGATCATC
GAACTGCTGG GCATTTCCCA GGCCCTGGTG GCGATCAGCA AGTGCGACCG GGTCGAGCCG
TCGCGCCTGG CCGAGGTGCA GATACAAGTT AGTGAACTGC TGGCGCCTGG GCCGTATGCC
GGGGCGCGGC AGTTCCCATT GTCGAGCATC AGCGGGGAAG GCATCGAAGC GCTACGTCAG
GCGCTGCTGG AAGCCGAAGC AGGTGTGCGA CAACGGAGTG CGCGCGGTGG CTTTCGCTTG
GCCGTCGACC GTGCCTTTGC GGTTACCGGC GCCGGTGTGG TGGTCACCGG CACGGCACTG
GCCGGGCGGG TCAGTGCTGG TGATACGTTG TTGCTGGGTA AGGCCGGCAA GCCGGTGCGC
GTGCGTGGCC TGCATGCACA GAACCAGGCC GCGCTGGTGG CTGAGGCGGG TCAGCGGGTG
GCGCTGAACA TCGCTGCCGA GCGCCTGACC GTGGAGCAGG TGCACCGGGG CGACTGGCTG
GTACCCGAAT GGTTGCACGC ACCCAGTGTA AGGGTGGATA TCGAGCTGAA CCTGTTGCCG
GGCGAAACGC ATACCTTCGA ACACTTCAGC GCCGTGCATG TGCACCTTGG CACCCAGGAT
GTAACCGCCA GGGTCGCCTT GCTTGAAGGC CAAAGCCTGG CGGCCGGCCA ACGCATGTTT
GCCCAGTTGC TGCTGAATGC GCCGCTGCAA GCGGTGCACG GCGACCGCCT GGTGCTGCGC
GACCAGCGTG CCCAGCGCAC ACTGGGCGGC GGCAAGGTGC TCGACCCGTT CGCCCCCAGC
CGCCAACGCC GCACCGATGA GCGCCTACGG CAGTTGCAGG TGCTGCGTGA TGCCGTGGAT
CTGGAGCAGG CGCTGCCAGC GCTGCTCGCC AGCGCCCCGG CCGGTATCGA CCCACAGCGA
CTAGAGCGGC AGTTCAATCG CCTGCGCGAA ACCTGGCATT TGCCGAAGGA TGTACTGGTG
GTGGCTACGC GGCAGGGCCA ACTGTTGTTC GCCAACGCCC AATGGCAGGC GCTCAAGCAG
CAGGTGCTGG CGCAACTGGC GCGTTTCCAT GAGCAAGAGC CCGACCAGCT CGGCCCGGAC
CGTGACCGCC TGCGCCGCTT CGTAGCCTTG CCCCTGGAAC GGCCGGCGTT CGTCAGCCTG
CTGGATGAAT TGCTCGAAAA CGGCGCCCTG GCCAGCAGCG GGCCCTGGCT GCATCTGCCC
GATCACAAGG TGCAGTTGAG CGAAGCCGAC AGTGCATTGT GGGCACGTTT GCAGCCCAGG
TTGCTGGCAG GGCAATACGA TCCACCCTGG GTCCGGACGC TGGCGAGTGA GGAGAGTTGC
GCCGAAGCCG ATGTGCGCCT GTTGCTGCGC AAGTTGGCTC GGCTGGGCTT GGTGCATCAG
GTGGTGCGTG ACCTGTTCTA CCCAGAGGCG ACGCTACAGC GCATGGCAGA GCTGCTGCTG
GGGCAGGCCC GCGAAACGCC AATAGTGCAG GTTGCCGCGT TTCGCGATAT GTTGGGCATC
GGTCGCAAGC GCAGTGTGCA GATTCTGGAG TACTTCGACC GCATCGGCCT GACCCGGAGG
GTGGCCGACC AGCGTCACAT CCGCGCCGAC AGCGCCCTGG CCCAACAGCA GGCCAGGCAC
TGA
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| Protein sequence | MIVGTAGHID HGKTALLQAL TGQAGDQRQE ERARGMTIDL GYRYAALSEG APLTGFIDVP
GHERFIHNML VGAHGIDLVL LVVAADDGVM PQTREHLAII ELLGISQALV AISKCDRVEP
SRLAEVQIQV SELLAPGPYA GARQFPLSSI SGEGIEALRQ ALLEAEAGVR QRSARGGFRL
AVDRAFAVTG AGVVVTGTAL AGRVSAGDTL LLGKAGKPVR VRGLHAQNQA ALVAEAGQRV
ALNIAAERLT VEQVHRGDWL VPEWLHAPSV RVDIELNLLP GETHTFEHFS AVHVHLGTQD
VTARVALLEG QSLAAGQRMF AQLLLNAPLQ AVHGDRLVLR DQRAQRTLGG GKVLDPFAPS
RQRRTDERLR QLQVLRDAVD LEQALPALLA SAPAGIDPQR LERQFNRLRE TWHLPKDVLV
VATRQGQLLF ANAQWQALKQ QVLAQLARFH EQEPDQLGPD RDRLRRFVAL PLERPAFVSL
LDELLENGAL ASSGPWLHLP DHKVQLSEAD SALWARLQPR LLAGQYDPPW VRTLASEESC
AEADVRLLLR KLARLGLVHQ VVRDLFYPEA TLQRMAELLL GQARETPIVQ VAAFRDMLGI
GRKRSVQILE YFDRIGLTRR VADQRHIRAD SALAQQQARH
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