| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ppha_2842 |
|---|
| Symbol | |
|---|
| ID | 6461173 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pelodictyon phaeoclathratiforme BU-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011060 |
|---|
| Strand | + |
|---|
| Start bp | 2928588 |
|---|
| End bp | 2930984 |
|---|
| Gene Length | 2397 bp |
|---|
| Protein Length | 798 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 50% |
|---|
| IMG OID | 642728990 |
|---|
| Product | DNA topoisomerase I |
|---|
| Protein accession | YP_002019605 |
|---|
| Protein GI | 194337811 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG0550] Topoisomerase IA
[COG0551] Zn-finger domain associated with topoisomerase type I |
|---|
| TIGRFAM ID | [TIGR01051] DNA topoisomerase I, bacterial |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGCTTCAA AACCATCAAC ACCATCTGCC AGAAACAGGA CCCTGATTGT CGTCGAATCC
CCCTCAAAGG CAAAAACAAT CAATAAATAC CTTGGTGACA AGTATACCGT TTTCGCATCG
GTAGGCCATA TCAAGGATCT GCCAAAAAAG GAGATTGGTC TTGATTTTGA CCATCATTAC
GAACCGAGAT ATGAAATTAT TCCTGGAAAG GAAAAGGTCG TCCATCAGTT AAAAAAACTG
GCCGCAGAAG CTGATTCCAT CCTCATCGCG ACTGACCCTG ACCGCGAGGG TGAGGCTATC
GCATGGCATA TCTCCAAAGA AATCGGAGTA ACCAGCAAAC CGGTATCCCG CGTACTTTTT
AATGAAATTA CAAAAACCGC AATCATTGCG GCAATTCAGG CTCCGCGACA GATCGACGAC
CGCCTTGTGC GCTCCCAGCA AACCCGTCAG GGCCTTGACA AGATCGTGGG CTACAAAATC
AGCCCTTTTT TGTGGAATGT AGTGCTGCGC GGCCTTTCGG CTGGCAGGGT ACAGTCGGTC
GCGCTGCGAT TGATCTGCGA ACGTGAAGCG GAGATCAGCC GCTTCCAGAT ACAGGAGTAC
TGGTCGATTG CGGCTGAGTT TGTAACGGCA GGCAAGGAGT CTTTCAAGGC AAGGCTGATA
CGCTTTGAGG GTGACAAGCC GGAGATAGCC AATCAAAAGC AGGCGGAAGC GTTGGCGGCT
CTCATCAGAA AAGGCAATTT TGCAGTACGC GAAATCGCTC CACGCGTCCA GCAGCGTAAA
CAGCCTCTGC CTTTCACCAC TTCGCTCCTC CAGCAGGCGG CCTCAAACCA GCTCGGATTT
GGCTCCAAGA AAACCATGGG AGTGGCACAA CAGCTCTATG AAGGCATTGA CCTTGGCAAA
GAAGGCACGA CGGGTTTGAT CACCTATATG AGAACCGATT CAACTCGCAT CGGTGAGGAG
GCGATTGCTG AGGCAAGAAG CTATATCAAC CAGCAGTTCG GCAAGGAGTA TATCGGTTTC
GGTGGAGCGG CAAAGCCCGG AAAAAATGCC CAGGATGCAC ACGAAGCCAT ACGGCCAACA
TCGATTTTTA ACAAACCCGA CCAGGTCAAA CCCTACCTTT CTGCCGATCA GTTTAAATTA
TACGAATTAA TCTGGAAGCG TTTTCTCGCC TCCATGATGT CAGCGGCTAA AATCGAACAG
ACCAGGGTTG ATGTTGAGGA CAGCGCTTCA AAATTCCTCT TCAGGGCAAC AGGCAGCAGA
GTGCTTTTCC CCGGCTTCAT GCGTGTCTAT GACGACCAGA AGGAGCTTGA CTACGAAGCC
CAGACCTCAA CGAAGGAGGA GGTTGAAAAA GAGCTGACCG TCAAGCTGCC CGAAAGGCTT
GCTGTCAATG AGCCTCTTGC TTTGGATGAT CTTGACCAGA AACAGAGCTT TACCCGCCCT
CCTGCACGTT ACAGTGAAGC CACACTGGTG AAGGATCTCG ACCACTTTGG TATTGGACGC
CCATCAACCT ATGCATCCAT TTTTTCAACA CTGCAGGATC GCCGTTATGT GGAGCTGGAA
AAGAAAAAAA TTGTGCCCAC TGAACTCGGC AAGGATGTCT CGCTGATCCT GGTTGCCAAT
TTTCCTGACC TCTTCAATGT CGACTTTACC GCCTTCATGG AGAATGAACT GGACAAGGTA
GCAAGCGGAG AGGACGAATA TGAAAAAGTG CTCGACAGCT TCTACAAACC ACTTGAAGCG
GTACTGCACC TTCGCAAAAG CAATCCAATT GTACCACAGA ACAGTGAGCC CGTAACTTGT
GAAAAGTGCG GTGAAGGGCT GATGGTTGTC AAATGGACGG CAAATGGGAA ATTTTTTGGC
TGTTCATGCT ACCCCAAATG CAAGAACATC AAGGCGATAA GCAACAACAA GGCAAAACCT
GTTGATTCAG CCATCCTCTG CCCCTCCTGC AAAGAAGGAC ACATGCTCTT GCGCAGCGGA
AGATTTGGCA CTTTTCTTGC CTGCTCCGGC TACCCCAAGT GCAATACGCT GCTCAATCTC
AACAAACAGC GTCACATAGA ACCCATGAAA ACCCCTCCGG TACTGACCAC TCTTCTCTGT
CCAAAGTGTG GGTCACCGCT TTACCTCAGG AGCGGAAAAA GGGGATTATG GCTTGGTTGC
TCAAAATTCC CCAAGTGCAA GGGGCGCCTC GCATGGAGTA CTCTTGACGA AAAAGCTCAA
CACCACTGGG AAGCAATCAT GGCTGAACAC CAGAAGGCTC ACCCCACAGT CCAGCTTACG
ATGATTGATG GGAAAGCAGT ACCCATGACA ATTCCCGTTG ATGAGATCAT TCTCAAGGCG
GAAGAGGCCG GGCTGATTAC CTCTCCCAGT GAAGAAATCG TCGAAATCAC GCCATAA
|
|---|
| Protein sequence | MASKPSTPSA RNRTLIVVES PSKAKTINKY LGDKYTVFAS VGHIKDLPKK EIGLDFDHHY
EPRYEIIPGK EKVVHQLKKL AAEADSILIA TDPDREGEAI AWHISKEIGV TSKPVSRVLF
NEITKTAIIA AIQAPRQIDD RLVRSQQTRQ GLDKIVGYKI SPFLWNVVLR GLSAGRVQSV
ALRLICEREA EISRFQIQEY WSIAAEFVTA GKESFKARLI RFEGDKPEIA NQKQAEALAA
LIRKGNFAVR EIAPRVQQRK QPLPFTTSLL QQAASNQLGF GSKKTMGVAQ QLYEGIDLGK
EGTTGLITYM RTDSTRIGEE AIAEARSYIN QQFGKEYIGF GGAAKPGKNA QDAHEAIRPT
SIFNKPDQVK PYLSADQFKL YELIWKRFLA SMMSAAKIEQ TRVDVEDSAS KFLFRATGSR
VLFPGFMRVY DDQKELDYEA QTSTKEEVEK ELTVKLPERL AVNEPLALDD LDQKQSFTRP
PARYSEATLV KDLDHFGIGR PSTYASIFST LQDRRYVELE KKKIVPTELG KDVSLILVAN
FPDLFNVDFT AFMENELDKV ASGEDEYEKV LDSFYKPLEA VLHLRKSNPI VPQNSEPVTC
EKCGEGLMVV KWTANGKFFG CSCYPKCKNI KAISNNKAKP VDSAILCPSC KEGHMLLRSG
RFGTFLACSG YPKCNTLLNL NKQRHIEPMK TPPVLTTLLC PKCGSPLYLR SGKRGLWLGC
SKFPKCKGRL AWSTLDEKAQ HHWEAIMAEH QKAHPTVQLT MIDGKAVPMT IPVDEIILKA
EEAGLITSPS EEIVEITP
|
|---|
| |