Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Ppha_2147 |
Symbol | |
ID | 6462511 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pelodictyon phaeoclathratiforme BU-1 |
Kingdom | Bacteria |
Replicon accession | NC_011060 |
Strand | + |
Start bp | 2229298 |
End bp | 2232609 |
Gene Length | 3312 bp |
Protein Length | 1103 aa |
Translation table | 11 |
GC content | 50% |
IMG OID | 642728343 |
Product | transcription-repair coupling factor |
Protein accession | YP_002018967 |
Protein GI | 194337173 |
COG category | [K] Transcription [L] Replication, recombination and repair |
COG ID | [COG1197] Transcription-repair coupling factor (superfamily II helicase) |
TIGRFAM ID | [TIGR00580] transcription-repair coupling factor (mfd) |
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Plasmid Coverage information |
Num covering plasmid clones | 13 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAAAACGT TATCAGGAAT AGAGCCACAA AGCGCTGCCG TCACAAAAAA AAATCCCGGG TTCCTCATCG ATACCATCAG GCAATCGAAA CCGTTCATTC TGCTGAAAGA GGCGCTGCGT AGCGCTCTGC CTGATAAAAC AGGCTGTTAT GACCCGGCTG ATGTGGCCGG CCTGCAGGGC TCACTCTCTT CAATCATGGC TGCAACCCTG TTTACTGACC TCCCCTCCCC TCTCATGCTG CTTTGCGGCC AGAACAGCTT CGAGCGCTAT GAAAATGATT TTGCGGCGCT TCTTCCTAAA GAGTGCATCT GCAATACATC GGATGAACTC TCTCTCTCTA TCGGAGCGCT ATCTACCGGA AAAAAATCGC TTATCCTCTC TTTTTTCGAT GATCTTGACG TCACACTCTG CCAGCCAGGC GAAGCAGAAA ACCGGATTTT CCGTCTGAAA ACAGAGTTCG ATGCGGGATA TGAACCCCTG AAACGCTTTT TGACGGCCAA CAGCTTTGAA CAAAGAGAGT TTGTTGAAGA TGAAGGCGAG TTTTCGGTGC GGGGCTCAAT CATCGATGTC TTCCCTTTTG GAGCAGGTGA ACCCCTGCGC ATAGAATTTT TCGGCGATAC CATCACCTCA CTGCGAGTAT TCGATATCAA CAGTCAGCTC TCAGGAAAAA CTTTGCTGGC AGCCGATCTC ACGGCCAGCT TTACCGATGC CCTGAACAGC GCCCCGGAGA GCGAAACAAC CATTCTTGAC TATCTTGATC CGGCAACCCT CATCATCATT GATGATTCAA CCGAGTTTGC ATTGCGGGAT AACCATGAGA GCCTCACCAT GGCGCTTTCA CGCTTCCGCA CTGTCAGAAT CAGCCAACTC TCGCCTTCTG CAATAGATTT CTGTTCCGGC CCCCAGAAAA AACTGAACGC CAATTTCCGT TCGCTTGCCG CCCAACTCCA GCAGGAAACT GCAGAACACA AAAAGCCGCT TTTTGCAACC AGTTCACGCC GCGAGATCGC TGAATTGACA GATTTTCTTG CAGAGGAAAT TTCAAGTTCA AAAAAAACCG GACAACTTGA AGCGAGCTGG ATTCCGGTCA ATTTGCATAC CGGATTTACT TTTGGCGATC TTGATCTCTA TACCGAATCC GATATCTTCG GCAAGCTGCA CGCCCATAAA GCACACCGGA AACGGAAAAT CCGGGGAATT TCACTCAAAG ATCTCCAGAA GCTTAAAGTT GGCGATTATG TTGTCCATGA GGATTACGGT ATCGGAATTT TCCGCTCCCT TGAAACCATA ACGGCAGGGA ATTCCGAACA GGAGTGTGTG CTTGTTGAAT ATGCCGGAGG AGACAAGCTT TTTGTCAATA TCCAGAATAT CCGGCTGCTC TCGAAATATA CCGCATCCGA AAGCTCTCTT CCTGCCCTCT CAAAACTTGG CAGTTCAAAA TGGGCGGCAA AAAAGGATAA AGTTCGCAAG CAGCTCCGCG ATATTGCCAT CAATCTGATC AAGGTTTATG CACAGCGAAA AATGCAAATC GGATTTGGTT TTGCTCCCGA CTCCATCTAC ATGCGGGAGT TCGAAGCCTC ATTTATTTTT GACGAAACGC CCGATCAGCT CAAGGCGATT CATGACGTCA AAAAAGATAT GCAGGAGCCC CACCCGATGG ATCGTCTGAT CTGCGGTGAC GCCGGATTCG GAAAAACCGA GATTGCCATG AGGGCCGCAT TCAAGGCGGT GGAATCGGGC AAACAGGTTG CCGTACTGAC CCCAACAACC ATTCTTTCTC ACCAGCACGC AGAATCCTTT ACCAGAAGAT TTGAAAATTT CCCGATTTCA ATAGCCGTGC TCAGCCGTTT TGTGCCACGC AAGGAGCAGC AGAAGGTTAT TAAAAGAATA GCAGAGGGAA CCATTGATAT TGTAATCGGC ACTCACCGGC TGGTCTCAAA GGATGTGCTC TTCAAGGATC TCGGACTCCT CGTCATTGAT GAAGAGCAGC ACTTTGGCGT AGAGGTAAAA GAGAAGCTGC GTGAACAGTT CCCCGGAGTC GATACGCTGA CCATGTCGGC CACACCCATT CCGCGAACCC TGCAGTTTTC CATGCTTGGC GCCAGGGATC TCTCCATTGT CTCGACCCCT CCAAAAAACC GCCAGCCCGT TGAAACCCTT ATTACCGACT ATGATCCGGC GCTCATTCAA TCGGCTATCC GCCGGGAAAT AAAGCGGGAG GGGCAGGTCT TTTTTCTGCA TAACCGCATT GCATCGCTTG ACGATATTCT CCAGACACTC CGCGAGCTTG TTCCCTCGGC CCGGATTGTT TTCGCTCATG GCCAACTGCC CCCGAGAGAG CTTGAAAAGA TCATGATGGA TTTCATGCAA AAAGAGGTAG ACGTGCTCAT CTCTACCACC ATCATTGGCT CCGGGCTCGA CATCTCCAAT GCCAATACCA TAATCATCAA CCGCGCCGAC ATGTTTGGAC TCTCTGATCT CTACCAGTTG CGCGGAAGAG TTGGAAGAAG TGAACGAAAG GCTTACTGCT ACCTTATCGC ACCACCGCTG AATACCCTGA AAAAAGAGGC CGTTCAGCGT CTTGCCGTTA TTGAGAGCTT TACTGAACTG GGATCTGGTT TCAACATCGC CCTGCGCGAC CTTGATATCC GGGGAGCAGG CAACCTGCTC GGAGCGGAGC AGTCGGGATA CATCCATGAA CTCGGCTTCG ATCTCTACCA GAAAATGCTT GAAGAGACCG TTGCCGAACT CAAATCGACC GAGTTCAGCC ACATGTTTTC CGCCGAAGGC GCCAAGGCCG CAAGAAGCGC CAAAACGTGT GACCTGCTCT TCTTTTTTGA TGCCCTCATT CCGGAATACT ATCTCACCGC AACCCCTGAG CGCTTCGCCT TTTATGACAA AATTGCGAAA GCCTCAACAG AGCATAAGGT CGATACCCTC GAGGCAGAGC TCAAGGATCG CTTCGGCCCC CTCCCCGAAG AGGTCGGAAA CCTGCTGCTG CTGACAAAAC TCAAAATCAC GGGATCGGCG CTCGGACTGG AAAAAATTGA CCTCCAGCCA CAAAGCGCCA TCCTCTTTCT GCCCGATCAG GATAACGACC ATCTTGCCAA CAAGGCCTTC CTCCAATACC TCTTTGTATC AGTGCAGGAA CCCTGGATGG AGGAGTATAA ACCGGGATTC AAGATGGATA AAAAGATGAA GCTGGTGCTG CACCACCCTT CCGGCAGCGA TACATCACCG GCAGGACTGC TCCACCGGTA CACCGAGCTG CTGAAAAAAC TTGAGCTGGC TTCGAAGGAG ATGGCATTAT AA
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Protein sequence | MKTLSGIEPQ SAAVTKKNPG FLIDTIRQSK PFILLKEALR SALPDKTGCY DPADVAGLQG SLSSIMAATL FTDLPSPLML LCGQNSFERY ENDFAALLPK ECICNTSDEL SLSIGALSTG KKSLILSFFD DLDVTLCQPG EAENRIFRLK TEFDAGYEPL KRFLTANSFE QREFVEDEGE FSVRGSIIDV FPFGAGEPLR IEFFGDTITS LRVFDINSQL SGKTLLAADL TASFTDALNS APESETTILD YLDPATLIII DDSTEFALRD NHESLTMALS RFRTVRISQL SPSAIDFCSG PQKKLNANFR SLAAQLQQET AEHKKPLFAT SSRREIAELT DFLAEEISSS KKTGQLEASW IPVNLHTGFT FGDLDLYTES DIFGKLHAHK AHRKRKIRGI SLKDLQKLKV GDYVVHEDYG IGIFRSLETI TAGNSEQECV LVEYAGGDKL FVNIQNIRLL SKYTASESSL PALSKLGSSK WAAKKDKVRK QLRDIAINLI KVYAQRKMQI GFGFAPDSIY MREFEASFIF DETPDQLKAI HDVKKDMQEP HPMDRLICGD AGFGKTEIAM RAAFKAVESG KQVAVLTPTT ILSHQHAESF TRRFENFPIS IAVLSRFVPR KEQQKVIKRI AEGTIDIVIG THRLVSKDVL FKDLGLLVID EEQHFGVEVK EKLREQFPGV DTLTMSATPI PRTLQFSMLG ARDLSIVSTP PKNRQPVETL ITDYDPALIQ SAIRREIKRE GQVFFLHNRI ASLDDILQTL RELVPSARIV FAHGQLPPRE LEKIMMDFMQ KEVDVLISTT IIGSGLDISN ANTIIINRAD MFGLSDLYQL RGRVGRSERK AYCYLIAPPL NTLKKEAVQR LAVIESFTEL GSGFNIALRD LDIRGAGNLL GAEQSGYIHE LGFDLYQKML EETVAELKST EFSHMFSAEG AKAARSAKTC DLLFFFDALI PEYYLTATPE RFAFYDKIAK ASTEHKVDTL EAELKDRFGP LPEEVGNLLL LTKLKITGSA LGLEKIDLQP QSAILFLPDQ DNDHLANKAF LQYLFVSVQE PWMEEYKPGF KMDKKMKLVL HHPSGSDTSP AGLLHRYTEL LKKLELASKE MAL
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