| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ppha_0625 |
|---|
| Symbol | |
|---|
| ID | 6461711 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pelodictyon phaeoclathratiforme BU-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011060 |
|---|
| Strand | + |
|---|
| Start bp | 600029 |
|---|
| End bp | 600775 |
|---|
| Gene Length | 747 bp |
|---|
| Protein Length | 248 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 53% |
|---|
| IMG OID | 642726887 |
|---|
| Product | protein of unknown function DUF218 |
|---|
| Protein accession | YP_002017542 |
|---|
| Protein GI | 194335748 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG1434] Uncharacterized conserved protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 6 |
|---|
| Plasmid unclonability p-value | 0.0050402 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGATCAATA AAATTCTGCC TCTTCTTGTT TTGCCGTCGG GGTTCAGCCT GTTGTGTCTG
CTGGCTGGAT TGCTGTTGCG CAACAGCTTT TTTCTTTGGC TTGGAACTCT GCTGCTTTTG
GCGTTCAGTA TGCCTGTGAT GAGTGATTTT TTGATGCGTT CTGTTGAGGT TGGCGAGGGG
AGAGTGCCGG TCAGCAGTGT CGGGAAGGCT GATGCGATTG TTGTGTTGAG TGGTATGATT
GTGACGGTTG ACGGGGCGCC GCTGGGGGAG TGGGGTGGTG CTGTGGATCG GTTTGATGGT
GGCGTTGAGC TTTTCAAGGC GGGAAGAGCT CCTGTGGTGG TTTTTACTCG TGGGCAGGTG
CCGTGGCAGC CGGGTGTGGT GCCTGAGGGT GAGTTGCTGG CGAAAAGGGC TTTGCTGCTT
GGTGTGCCGC AATCGGCTAT CCGTTTGACG GGTAAGGCGG GTAATACGGC GGATGAAGCT
GCTGCGGCAA GTGTGTTGCT CGGTGCTTCA AAAAAAGGAG TTCCGAGGAG AATTATTCTT
GTTACCAGTG CTTTTCATAT GCGTCGGGCG CGTTTTTTGT TTGAACGTGC GGGGTTTGCT
GTTGAGCCTT TTTTGGTGGA TTATCAGACC AGTGAGAAGA GCCCATTGAC GGTGCTCTCT
TTTTTGCCGA ATGCCGAGGC GCTTGCGCAG TCCGACAGGG CATTGCGTGA GGTGATCGGC
TTGCTTTTCT ATTGGGTTAC AAAATAA
|
|---|
| Protein sequence | MINKILPLLV LPSGFSLLCL LAGLLLRNSF FLWLGTLLLL AFSMPVMSDF LMRSVEVGEG
RVPVSSVGKA DAIVVLSGMI VTVDGAPLGE WGGAVDRFDG GVELFKAGRA PVVVFTRGQV
PWQPGVVPEG ELLAKRALLL GVPQSAIRLT GKAGNTADEA AAASVLLGAS KKGVPRRIIL
VTSAFHMRRA RFLFERAGFA VEPFLVDYQT SEKSPLTVLS FLPNAEALAQ SDRALREVIG
LLFYWVTK
|
|---|
| |