| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ppha_0483 |
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| Symbol | |
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| ID | 6462079 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pelodictyon phaeoclathratiforme BU-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011060 |
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| Strand | + |
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| Start bp | 472750 |
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| End bp | 474774 |
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| Gene Length | 2025 bp |
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| Protein Length | 674 aa |
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| Translation table | 11 |
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| GC content | 58% |
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| IMG OID | 642726771 |
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| Product | DNA ligase, NAD-dependent |
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| Protein accession | YP_002017426 |
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| Protein GI | 194335632 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG0272] NAD-dependent DNA ligase (contains BRCT domain type II) |
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| TIGRFAM ID | [TIGR00575] DNA ligase, NAD-dependent |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACCGATA TCATTCGTGC CGCAGAGGCG ATTGCACAGC TTCGCCGGGA GATCGAGCGG
CACACCCATC TCTACTATGT TGAGGCAAAG CCGGAGCTCT CCGATTTTGA ATTTGACCAG
CTTCTCGATC AACTCATCAC CCTTGAGCGG CAATTCCCGC AACTGCTTAC CCCCGACAGC
CCCTCGCAGC GGGTGGGAGG AGCCATTACC AGGGAATTTC CTGCAGTGCA GCATCGTGAG
CCGATGCTCA GCCTCTCAAA CAGCTACTCC ATCACCGAGG TGGAGGAGTT TTACAACCGC
GTCCGAAAAC TCCTCGCCCT CGAAGGGGTT GTGGAGCAGG AGATGGTTGC CGAGCTGAAA
TTTGACGGTG TTGCCATCAG CCTCATCTAC CAAGACGGCA TTCTCGTACG CGGCGCAACA
CGGGGTGACG GTCGGCAGGG TGATGATATC ACGGCTAATC TGAAGACCGT TGCCACCATT
CCCCTCCGAC TGGAGGAGAC TCTTGTCGCA GCTCTTCAGG GGGAGGAGAG AGCGATCGAG
GTGCGCGGCG AAGTCTTCAT GCGCAAGGAG GATTTTGAAC GTCTCAACGA GAGCCGTCCC
GATGAAGATC GATTTGCCAA CCCCCGCAAT GCCACGGCAG GCTCACTCAA ACTGCAGGAT
TCCGGTGAAG TGGCCCGTCG CAGCATGAGT TTTGTTGCCT ACTACCTGAA AGGGCTCAAG
GATGAATCCA CACCCCACAT CCATCGTCTC GAACTGCTCG CCCGTCTCGG CTTCTTTACC
GGCGACCACT ACCGGCTCTG CAATACCCTC GAGGAGATCA ACACCTATAT TGCCGAATGG
GCAGAAAAGC GCTGGCAGCT CCCCTACGAG ACCGACGGAG TGGTGCTCAA ACTCAACGAT
GTCCCTTTCC GCGAAAAACT TGGCGCAACC GCAAAAAGCC CACGCTGGGC CATAGCCTAC
AAATATCCGG CACAACAGGC CAGATCGGTG CTCCAAAACG TGCTCTTCCA GGTAGGACGG
CTCGGCACCA TCACCCCTGT TGCCGAACTT GAGCCCGTCC TGCTTGCCGG TTCAACCGTC
TCCCGCTCCA CCCTCCATAA CTTCGACGAA ATCGAGCGCC TTGGGCTCAT GCTCCGCGAC
CGGGTCATCA TCGAAAAATC AGGCGAGGTC ATTCCCAAAG TGGTGCGCAC CCTCTTCGAA
GAGCGCCCCG CCGATGCCAT GCCCATTCTG CCGCCTACCC ATTGCCCCTC ATGCGGCGCC
CCGCTCGTCC GACCGGAGAA CGAAGTCAGT TACTCCTGCC CGAACGAAGA GGAGTGCCCG
GCCCAAATAA AAGGGCGGCT GCTGCACTTT GCATCGCGCA ATGCCATGGA TATCCAGACC
CTCGGCGACG CCCTCGTCGA GCAGCTTGTA GCCAAAGGGC TTGTCAAAGA TCCCGGCGAC
CTCTACTTTC TTCAGGAACC ACAGCTCGAA AAGCTTGAAC GCATGGGGCC AAAATCGGCA
CAAAACATCC TGCGCGCTTT GGAGAAAAGT CGGGAAAAAA GCTATGAACG ACTCCTCTAC
GCTCTCGGTA TCCGTCACGT CGGACGCGCC ACCGCCCGTG AACTCTCGCA AGCCTGCCCC
TCCATCGATC TTCTCCGGGA GGCCAGCGAG GAGCAGCTTG CCACCATCCC CGATATCGGC
CCGGTTGTCG CCCGCAGCAT CATCGACTAC TTTGCAAAAC CATCATGGCC ACACCTCCTT
GAAAAACTCC GCACGGCAGC GCTGCAACTC AGTGCATCGG AGCCCAAAGA GCAGGTCAAC
CGCAATTTCG AGGGAGTCAC AGTACTCTTT ACCGGCAGCC TTGAACGCTA CGACCGCCAG
AAAGCCTCGG AACTGGTGCT TGAACGCGGC GGCAGGGTAG TCGGCTCCGT CAGCAAAAAG
ACCGGCATGG TTGTTGCTGG CCAAGACCCC GGCAGCAAGC TGCAGAAAGC CAACAAGCTC
GGAGTCAGGG TTGTGTCGGA AGATGAATTT GAAGCCATGC TGTAA
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| Protein sequence | MTDIIRAAEA IAQLRREIER HTHLYYVEAK PELSDFEFDQ LLDQLITLER QFPQLLTPDS
PSQRVGGAIT REFPAVQHRE PMLSLSNSYS ITEVEEFYNR VRKLLALEGV VEQEMVAELK
FDGVAISLIY QDGILVRGAT RGDGRQGDDI TANLKTVATI PLRLEETLVA ALQGEERAIE
VRGEVFMRKE DFERLNESRP DEDRFANPRN ATAGSLKLQD SGEVARRSMS FVAYYLKGLK
DESTPHIHRL ELLARLGFFT GDHYRLCNTL EEINTYIAEW AEKRWQLPYE TDGVVLKLND
VPFREKLGAT AKSPRWAIAY KYPAQQARSV LQNVLFQVGR LGTITPVAEL EPVLLAGSTV
SRSTLHNFDE IERLGLMLRD RVIIEKSGEV IPKVVRTLFE ERPADAMPIL PPTHCPSCGA
PLVRPENEVS YSCPNEEECP AQIKGRLLHF ASRNAMDIQT LGDALVEQLV AKGLVKDPGD
LYFLQEPQLE KLERMGPKSA QNILRALEKS REKSYERLLY ALGIRHVGRA TARELSQACP
SIDLLREASE EQLATIPDIG PVVARSIIDY FAKPSWPHLL EKLRTAALQL SASEPKEQVN
RNFEGVTVLF TGSLERYDRQ KASELVLERG GRVVGSVSKK TGMVVAGQDP GSKLQKANKL
GVRVVSEDEF EAML
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