| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ppha_0446 |
|---|
| Symbol | |
|---|
| ID | 6462193 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pelodictyon phaeoclathratiforme BU-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011060 |
|---|
| Strand | - |
|---|
| Start bp | 429219 |
|---|
| End bp | 431876 |
|---|
| Gene Length | 2658 bp |
|---|
| Protein Length | 885 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 53% |
|---|
| IMG OID | 642726733 |
|---|
| Product | Tetratricopeptide TPR_2 repeat protein |
|---|
| Protein accession | YP_002017389 |
|---|
| Protein GI | 194335595 |
|---|
| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG3063] Tfp pilus assembly protein PilF |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTGCGTTT TCGGCTGCAA TGGATTGACG CCCTGTCAGT CACCTGAGGG TAGCTCTCAA
AAGGCGCCTT CGTCTCTCTT CACTTCCGGG GTGATTCTGG CAATTTTTGT CCGCCTTTTC
ATCTTTTTCA CGATTGAGTG TAACGAGACG CTCCATGCGG CAGTCAATAG CGATGCCGAC
AGGCTCTATT CGGCAAAAAG CTACGAACAA GAGATCATCA AAGCCAAGAA AGCGCTTGAG
GTATCGGATT CCAGCCTTGC TCAAACCGAT CTGACGCTCT GCCTGAACAA CCTTGCGGCT
CTCTACTTTG TCGAGGGACG GTATGCTGAG GCTGAACCAC TTTACCTCCG GGCTCTCGAT
ATTCGCACGA AGCTGCTTGG CCCCGATCAT GCCGATGTGG CCGTGAGTCT CAACAATCTG
GCCATGTTAT ACAATGCCGA AGGAAAATAT GCCGAAGCAG AGCCTCTTCT GACCCGTGCG
CTTGCCATAC AGGAGCGGAT GTTCGGTTCT CTCAATGCGG AGTTTGCCCT GATCCTGAAC
AATATGAGCG AGCTGTACTA TATGCAGGGT CACTATGCAG AGGCTGAGTC TCTCTGCAAA
CGCTCGCTTG CCATCCGGGA ACAACTTTTC GGAGAGAATC ACCCCGATAT TGCCCAGAGT
CTGAACAATC TTGCAAGAGT TTTCTATGAC CGGGGAAGGT ATGCCGAAGC TGAACCACTC
TACCTCCGTG CTCTTGATAT CTGGGAAAAC AATCCAGGCA GCGCCGAGCC AGATGCAGCA
AGGGCGCTCA ACAACTTGTC GGAACTCTAC CGCTCTGAAG GCCGGTATGC TGAAGCTGAA
CCTCTCTCTT TGCGAGCTCT TGCTCTCCGG GAGCGCGCTT TTGGCCTTGA ACACCCTTTG
GTGGCCACAA ACCTGAACAA CCTTGCACTC CTCTATAACA ATCAGGGAAG GTACGCCAAA
GCTGAACCGC TCTGCCGCCG GGCGCTGGCC ATCAGGGAGA AGCTGCTTGG CCCTCTTCAC
CCTGAAGTAG CCACAAGTCT GAGCAACCTT GCATTAATCT GTAAAAGTGA GGGGAAATAT
GCTGAAGCGT TGCCACTGTC GATGCGCGCA CTGGCCATCA GAGAAAAAAA CTTTGGCCTG
CAACACCCTT ATGTGGCAAA AAGTATGCAC AATCTTGCAG AGCTGTACGT CAGCATGGGC
CGCATGGCAG AAGCTCTTCC TCTCCACGAG GTTGCGCTGG CCACCCTGAC AAAGCTTCTC
GGTACCGAGC ATCATGATAC AGGGTTGAGC ATGAACCATC TTGCAGGGCT TTACTTTACC
CTCGGACAAT ATCAAAAGGC CGAACCACTC TACCGCCAGG CGCTTGCCAT TCACGATAAG
CTTGTTGGCC CTCTTCACCC TGATCATCCT GAAGTTGCAA CGACACTCAA TAACCTTGCA
GAATTGATGC GCATTCAGGG CCGGTATGCA GAGGCCGACT CCTGCAACCG CCGTGCGCTG
GCCATGAGGG AGAGGCTCTT TGGCCCGGAA CACCCCGATG TTGCCCTGAG CCTCTGCAAC
ACAGGCGTCC TGAAAAAAAA TCAGGGAAAA TACGCTGAGG CAGCACCTCT CTTCATACGT
TCACTGAAAA TCAGGGAGAA GCTCTTTGGC GCTGTACACC CTGATGTCGC AACGAGTCTG
AGTAACCTTG CGGCACTCTA CAAAAGTGAG GGAAGATATG CTGAAGCGTT ACCTCTCTCC
CAACGTGCGC TCGCCATCAG GAAAAAAGTA CTCACTCCTG AACACCCTGA TCTGGCAACA
AGCCTGAATA ACCTTGGGGT GCTTTACACT ATCCTGGGCA AGTATACACA GGCCGAGGCG
CTTTTGACCC GTTCTCTGGC TCTACGGGAG AAGTTGTTTG CTCCTCTTCA CCCCGATATC
GCAACAAGTC TGAATAACAT GGCAGAGTTG TTTCGCATTC AGGCCAGATA CCGTGAAGCT
GCTCCTCTTT ACCGCCGTTC TCTCGACATA CGGGAAAAGC TCTTTCCTCC CCTTCATCCC
GATATTGCCC TGACTCTTAA CAATTTTGCC CTGCTCTACT CCGATCAGGG AGAGTATGCT
GTAGCCGAGC CGCTCTATCT CCGAGCTCTC GACATCACGA AGAGGCTCTT TGGCCCGAAA
AGCCTTGATA CAGCAATAAG CATGAACAAC CTTGCGGCGC TTTACTCTGC TGGAGGCCGC
CATGCCGAGG CCGCGCCTCT TTACAGCGAT GCGATGGCCA TCATGGAGAA TGTTGATGCA
ACGCATCACG ACAGCCATAT GGTCGCCCTG AACAACCATG CAGAAGGGTA CCTCGCCAGC
AAAGACGATC ATGAGGCTGA GGATTGCGTT AAACGGTCAC TTGCAATCAG GGAGAAGAAT
TTCGGCACTC TTCATCCAAG CGTTGCGACC TGCCTGAATA ACCTTGCTGT AATTCTGGAT
GCCAAAGGCC AACATGCCGA GGCTGAGCCA CTCTATCTCC GTTCGATCGC TATTGTTGAG
TGCGCACTTT CCCCCGATCA CCCCGTTATT GCACAAATTC TTCAAAATCT TGCGCTCCTT
TACCGGAAAA CAGGAAGGGA TGGGGCCGCA GGGGAGCTTG AAAAACGAGC CCTGCTCATA
ACGGGCAAAA CACGATAA
|
|---|
| Protein sequence | MCVFGCNGLT PCQSPEGSSQ KAPSSLFTSG VILAIFVRLF IFFTIECNET LHAAVNSDAD
RLYSAKSYEQ EIIKAKKALE VSDSSLAQTD LTLCLNNLAA LYFVEGRYAE AEPLYLRALD
IRTKLLGPDH ADVAVSLNNL AMLYNAEGKY AEAEPLLTRA LAIQERMFGS LNAEFALILN
NMSELYYMQG HYAEAESLCK RSLAIREQLF GENHPDIAQS LNNLARVFYD RGRYAEAEPL
YLRALDIWEN NPGSAEPDAA RALNNLSELY RSEGRYAEAE PLSLRALALR ERAFGLEHPL
VATNLNNLAL LYNNQGRYAK AEPLCRRALA IREKLLGPLH PEVATSLSNL ALICKSEGKY
AEALPLSMRA LAIREKNFGL QHPYVAKSMH NLAELYVSMG RMAEALPLHE VALATLTKLL
GTEHHDTGLS MNHLAGLYFT LGQYQKAEPL YRQALAIHDK LVGPLHPDHP EVATTLNNLA
ELMRIQGRYA EADSCNRRAL AMRERLFGPE HPDVALSLCN TGVLKKNQGK YAEAAPLFIR
SLKIREKLFG AVHPDVATSL SNLAALYKSE GRYAEALPLS QRALAIRKKV LTPEHPDLAT
SLNNLGVLYT ILGKYTQAEA LLTRSLALRE KLFAPLHPDI ATSLNNMAEL FRIQARYREA
APLYRRSLDI REKLFPPLHP DIALTLNNFA LLYSDQGEYA VAEPLYLRAL DITKRLFGPK
SLDTAISMNN LAALYSAGGR HAEAAPLYSD AMAIMENVDA THHDSHMVAL NNHAEGYLAS
KDDHEAEDCV KRSLAIREKN FGTLHPSVAT CLNNLAVILD AKGQHAEAEP LYLRSIAIVE
CALSPDHPVI AQILQNLALL YRKTGRDGAA GELEKRALLI TGKTR
|
|---|
| |