| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ppha_0414 |
|---|
| Symbol | |
|---|
| ID | 6462289 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pelodictyon phaeoclathratiforme BU-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011060 |
|---|
| Strand | - |
|---|
| Start bp | 396863 |
|---|
| End bp | 397936 |
|---|
| Gene Length | 1074 bp |
|---|
| Protein Length | 357 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 54% |
|---|
| IMG OID | 642726701 |
|---|
| Product | isopentenyl pyrophosphate isomerase |
|---|
| Protein accession | YP_002017359 |
|---|
| Protein GI | 194335565 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG1304] L-lactate dehydrogenase (FMN-dependent) and related alpha-hydroxy acid dehydrogenases |
|---|
| TIGRFAM ID | [TIGR02151] isopentenyl-diphosphate delta-isomerase, type 2 |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAGCGAAA CAGCAAACAG CAGAACAACC GAGCGCAAGC AGGATCACAT CGAGATCTGC
CTGCATGGCG ACGTTGTCTT TAACGGAAAA ACGACGGGGT TTGAGCGCTT TGCCTTTGAG
CATGCTGCGT TGCCGGAGAT CTCGTTTTCC GATATTGATC TTTCGACCTC TTTTCTTGGA
AAGAGCATCG GCGCACCGCT GATGATCTCG TCAATGACGG GTGGGTACAG CGAAGCGGCA
ACACTCAACC AGCGCCTTGC TGAGGCGGCT GAACGGTTTG GGATTCCGCT TGGGGTGGGC
AGTATGCGGC AGGCGCTGGA AAACCGTTCG TACCGGGAGA GCTTTGCTGT TGTACGGAAA
TATGCGCCGA CTGTACAGAT TTTTGCGAAC ATCGGAGCGC CAGAGGTTGC GAAGGGGCTG
ACGGAAAGCG AGATCAATAC CATGCTGGAG CTGCTGAGGG CTGATGGGCT GATTGTCCAT
CTGAATGCCG CACAGGAGCT TTTTCAACCT GAAGGGAATA CCGATTTCCG CCATGTGCTT
GAACAGCTTG CTCTACTCTC TGCCAAAATT CCGGTGCCGG TTCTTGTGAA AGAGGTTGGA
TGCGGCATTT CGGCATCTGC TGCGCGGCAG CTCATTGCGG CTGGAGTAAA GGCGATTGAT
GTTGCCGGCG CAGGAGGCAT CAGTTGGCAG AAGGTTGAGG AGATTCGCTA TACCCGGCAG
TTTGGCCAGG AGAGGCGCTT CAGCCTGCAG GCTCTGGATG AGCTGCTGAA CTGGGGAATT
CCTACGGCAC AATGCCTGAT TGATATTGGC GCTCTGAAAA AAGAGTCGCC CGGTTTGAAC
GGAATTGAAA TCGTTGCTTC AGGAGGTGTC GGGAGTGGTA TGGATGTCGC CAAATCCCTC
GCCCTTGGAG CACAACTGGC CGCTTCGGCA AGAGCTCTTC TCAAAGCTCT TCATGACGGT
GTTCTTGAAG AGACCATTAC ATCCTGGCTG AACGATCTCA GGGCAGTCAT GTTCCTGACC
GGAACCGCAA CCATAGCGGA GCTTCGGCAT AAAACCCTTA TCACTAAACC ATGA
|
|---|
| Protein sequence | MSETANSRTT ERKQDHIEIC LHGDVVFNGK TTGFERFAFE HAALPEISFS DIDLSTSFLG
KSIGAPLMIS SMTGGYSEAA TLNQRLAEAA ERFGIPLGVG SMRQALENRS YRESFAVVRK
YAPTVQIFAN IGAPEVAKGL TESEINTMLE LLRADGLIVH LNAAQELFQP EGNTDFRHVL
EQLALLSAKI PVPVLVKEVG CGISASAARQ LIAAGVKAID VAGAGGISWQ KVEEIRYTRQ
FGQERRFSLQ ALDELLNWGI PTAQCLIDIG ALKKESPGLN GIEIVASGGV GSGMDVAKSL
ALGAQLAASA RALLKALHDG VLEETITSWL NDLRAVMFLT GTATIAELRH KTLITKP
|
|---|
| |