Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Ppha_0304 |
Symbol | rplF |
ID | 6462019 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pelodictyon phaeoclathratiforme BU-1 |
Kingdom | Bacteria |
Replicon accession | NC_011060 |
Strand | + |
Start bp | 294995 |
End bp | 295534 |
Gene Length | 540 bp |
Protein Length | 179 aa |
Translation table | 11 |
GC content | 44% |
IMG OID | 642726596 |
Product | 50S ribosomal protein L6 |
Protein accession | YP_002017254 |
Protein GI | 194335460 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG0097] Ribosomal protein L6P/L9E |
TIGRFAM ID | [TIGR03654] ribosomal protein L6, bacterial type |
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Plasmid Coverage information |
Num covering plasmid clones | 14 |
Plasmid unclonability p-value | 0.361286 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGTCAAGAA TAGGAAAAAT GCCCATACCC CTGAGCAATC AGGCGAAGAT AGAGATCAAA GATTCAAACA TCAGGGTATC CGGTCCTAAA GGCACTCTTG AACAGAGGCT GACCGATCAG GTAACCGTAT CGGAAGAAAA CGGTTTAGTT ACCGTATTGA GAATCGATGA CAGTAAAAAG GCTAAAGCAC AGCATGGTCT TTACCGTATG CTTATCAGCA ATATGGTTGA TGGTGTAACA AAAGGTTTTA CCAGAAAACT CGAAATTGCT GGCGTCGGGT ATCGTGCTGA GCTGAAAAAT GATCTGCTTG CCCTGACACT TGGCTATTCG CATATGATCT ATTTCAAGGC TCCGGATGAG ATTAAAATTG AAGTGCCTGA TCAGGTCACT GTTCTTGTAA GTGGCATTGA CAAGGCTCTT GTTGGTCAGG TTGCCGCCAA GATCCGTTCA TTCAGAAAGC CGGAACCTTA TCGTGGAAAA GGCATTAAAT ATGAAGGTGA AGTCATCCGC CGCAAGGAAG GTAAGGCTGC AGGCAAATAA
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Protein sequence | MSRIGKMPIP LSNQAKIEIK DSNIRVSGPK GTLEQRLTDQ VTVSEENGLV TVLRIDDSKK AKAQHGLYRM LISNMVDGVT KGFTRKLEIA GVGYRAELKN DLLALTLGYS HMIYFKAPDE IKIEVPDQVT VLVSGIDKAL VGQVAAKIRS FRKPEPYRGK GIKYEGEVIR RKEGKAAGK
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