Gene Pnuc_1933 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPnuc_1933 
Symbol 
ID5052212 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePolynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 
KingdomBacteria 
Replicon accessionNC_009379 
Strand- 
Start bp2010388 
End bp2011044 
Gene Length657 bp 
Protein Length218 aa 
Translation table11 
GC content47% 
IMG OID640472108 
Productputative transmembrane protein 
Protein accessionYP_001156709 
Protein GI145590112 
COG category 
COG ID 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones27 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
GTGAGTGATA CAGAGTTGTT GATACCAGCT TCGCAAGCAG ATGCTTCTGC GATCAATGCG 
CGGACCCGTC GCGGTCGCTT GCAAATGCTA TTTTTATTGC TAGCGTGTGC AGCCCCAGTC 
ATTGCCTCCT ATTTGGCATA TTACGTATTT AAGCCCGAAG GTGGAAAGAC AAATTTTGGA 
ACCCTCGTGC ATCCTACTCA AGCTGCGAAC TCTGCGTGGT TTAACGTTCC GCTTCAGGGC 
AAATGGACTT TGCTGATTGC TCGTCCTGCA GGCGAGTGCC AAATTAAAGA TGAGAAATGT 
ATTGAAGCTT TATTTTTGAT GCGGCAAGTT AAAGTAGCTG TCGGCAGAGA GAGCGGCCGC 
GTTCAGTTGT TATGGGTCAA TTTGGATGGT AAGCCCGTTG ACCCGGAGGT CACTAAAGCT 
TATGACGAAC AGGTAGCTGG ATTTAAAGTA GTTCCCCTGC CTACCAGTCC AAAGTTGCAA 
GCAGAGTTTT TGGCATGGCT GAATAAAGAA GGTGCCGGCG AGCAAATTCA GTTACTTGAT 
CCAAGCCCAG CGAAGATGAT GTATTTCCCG GTGACCAATT CTCCAAAAGA ATTTGGCGCT 
ATCAAAAAAG ATTTAGAAAA GTTACTGCGC TTGAATCATC AAGGCGAGAG CCTGTAA
 
Protein sequence
MSDTELLIPA SQADASAINA RTRRGRLQML FLLLACAAPV IASYLAYYVF KPEGGKTNFG 
TLVHPTQAAN SAWFNVPLQG KWTLLIARPA GECQIKDEKC IEALFLMRQV KVAVGRESGR 
VQLLWVNLDG KPVDPEVTKA YDEQVAGFKV VPLPTSPKLQ AEFLAWLNKE GAGEQIQLLD 
PSPAKMMYFP VTNSPKEFGA IKKDLEKLLR LNHQGESL