Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Pnuc_1618 |
Symbol | fumC |
ID | 5052375 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 |
Kingdom | Bacteria |
Replicon accession | NC_009379 |
Strand | - |
Start bp | 1685766 |
End bp | 1687223 |
Gene Length | 1458 bp |
Protein Length | 485 aa |
Translation table | 11 |
GC content | 46% |
IMG OID | 640471791 |
Product | fumarate hydratase |
Protein accession | YP_001156396 |
Protein GI | 145589799 |
COG category | [C] Energy production and conversion |
COG ID | [COG0114] Fumarase |
TIGRFAM ID | [TIGR00979] fumarate hydratase, class II |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 21 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
| |
Sequence |
Gene sequence | ATGAATGATG AAGTCATCCC AAAAATCCTC GATTTACCTA TTGGTTTAAG CGCTACTGGC GTACGGCAAG AATTCGATAG CCTGGGTAAT GTAGATGCTC CAGCAAATCG CTATTGGGGC GCCCAAACCG AGCGCAGCTT ACATCACTTT AATATCGGTA ATGACTTGAT GCCTAAAGAG GTTTATCAGG CCTATGGTTA TGTCAAAAAA GCAGCCGCCA TCGTAAATAC TGAGGCCGGA AGACTGCCAA AGTGGAAGGG CGATCTGATT CAAAAGGTGA GCGATGAAGT AATTAGCGGA TCTTTAAATA GTGAGTTCCC GTTATATGTA TGGCAAACCG GGTCAGGTAC GCAATCGAAC ATGAATGTGA ATGAAGTGAT TTCTAATCGC TGCATTCAAT TGGTTGGTGG CAAATTGGGT TCTCAAGCCC CGATTCATCC GAACGATCAT GTAAACATGG GCCAGTCAAG TAACGATACC TTCCCAACTG CGATGCATAT TGCCGCATAC AAGATGACTG TTGATAAGAC CCTTCCTGCG CTTAAGGGAT TGCGTGATGC GATTGATAAA AAAGCAAAGC AATGGGATCA AGTAGTCAAG ATTGGGCGCA CCCATTTAGA AGATGCAACG CCACTAACAG TCGGCCAAGA ATGGTCTGGT TATGTTGGCG CACTCGATGA TGCGATTGCT GATATTAAGC AAGCGGTTGA TGGATTGCTC GCTGTGGCGA TGGGCGGAAC TGCTGTAGGC ACTGGCTTGA ATGCACCCGT TGGTTTTGGT GAGGATGTTG CCAAGGTACT TAGTAAGTTG ACTGGGTACA ACATTCAAAC TGCCCCTAAT AAATTTACTG CACAGGGCAC TCTGGATCGC ATGGTCAGAG CCCATGCTGC ACTTAAATCA GCGGCAGTCA GCTTATTTAA GATTGCTAAT GACCTTCGTT GGTTAGGTTC CGGCCCAAGA ACCGGGTTGA TGGAAATTAA TTTCCCATCA AATGAACCGG GCTCATCTAT CATGCCGGGC AAAGTGAATC CAACCCAAGC TGAGGCGATG CTGATGGTCT GTATTCAGAT TATGGGATCT GACGTTGCCG TTCAAATGGC TGGTGCTGAA GGTAATTTTG AGCTCAATGC ATTCCGTCCT GTCATCATCA ATAACTATCT ACACTCTGCC TTAATCATGG CGGATATGTG TGATCATTTA AGAGAATTCA TGATTGAGGG TGCGGAATTG AATGAAGCAC AACTCAAAAA AAATATTGAA AATTCAGTCA TGATGGTTAC TGCGCTCTCC CCAATCATTG GATATGACCA GGCCTCACTC ATTGCTCATT ACGCGATCGA TAAAGGCTTG TCACTCAAAC AAGCGGCCCT GGCCAATGGT GTAACAGAAG ACTTATACGA TAAGGTAGTT ATTCCTATCA ATATGACTCA TCCGGGCTCG GCTGACGTCA AAAGCTAA
|
Protein sequence | MNDEVIPKIL DLPIGLSATG VRQEFDSLGN VDAPANRYWG AQTERSLHHF NIGNDLMPKE VYQAYGYVKK AAAIVNTEAG RLPKWKGDLI QKVSDEVISG SLNSEFPLYV WQTGSGTQSN MNVNEVISNR CIQLVGGKLG SQAPIHPNDH VNMGQSSNDT FPTAMHIAAY KMTVDKTLPA LKGLRDAIDK KAKQWDQVVK IGRTHLEDAT PLTVGQEWSG YVGALDDAIA DIKQAVDGLL AVAMGGTAVG TGLNAPVGFG EDVAKVLSKL TGYNIQTAPN KFTAQGTLDR MVRAHAALKS AAVSLFKIAN DLRWLGSGPR TGLMEINFPS NEPGSSIMPG KVNPTQAEAM LMVCIQIMGS DVAVQMAGAE GNFELNAFRP VIINNYLHSA LIMADMCDHL REFMIEGAEL NEAQLKKNIE NSVMMVTALS PIIGYDQASL IAHYAIDKGL SLKQAALANG VTEDLYDKVV IPINMTHPGS ADVKS
|
| |