| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pnuc_1513 |
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| Symbol | |
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| ID | 5052425 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009379 |
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| Strand | - |
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| Start bp | 1587824 |
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| End bp | 1589743 |
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| Gene Length | 1920 bp |
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| Protein Length | 639 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 640471686 |
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| Product | cytochrome c-type biogenesis protein CcmF |
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| Protein accession | YP_001156291 |
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| Protein GI | 145589694 |
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| COG category | [O] Posttranslational modification, protein turnover, chaperones |
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| COG ID | [COG1138] Cytochrome c biogenesis factor |
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| TIGRFAM ID | [TIGR00353] c-type cytochrome biogenesis protein CcmF |
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Plasmid Coverage information |
| Num covering plasmid clones | 22 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGATTCCTG AGTTTGGACA TTACGCACTC ATTCTGGCTC TATGCATCTC CTTAATTCAG
GGGGTATTAC CTTTGCTCGG AGCGCATTAT GGTCGCCGTG AATGGTTGGT ATTGGCTAGA
CCTGCTGCCC AAGCCTTATT TTTATTATTA GCGATTGCCT TTGGAATCTT GGCATGGAGT
TTTTACGTTA ATGATTTTTC TGTGCTTTAT GTAGCCGAGC ACTCTAACTC CCAATTGCCG
GTAATTTATC GCTTAGGGGC GGTCTGGGGC GGACATGAAG GCTCGCTACT TCTGTGGATC
TTTTTATTAA GTACCTGGAC TATCTTAGTG GCGCAACTCT CTAAAGCTTT AGACGAGTTC
ATGGTGGCAC GAGTGATTGG TGTCTTAGGT TTGGTTGCTA GTGGTTTATT GCTATTTGTT
TTAACTACTT CCAATCCTTT TGAGCGTTTA CTGCCTGCAG CGCAAGATGG CCGTTCACTA
AATCCTTTAT TGCAAGATCC CGGATTAGTG TTTCATCCGC CAATGCTCTA TATGGGATAC
GTCGGTTTTT CAGTGGCCTT TGCTTTTGCT ATTGCGTCAT TGTTATCTGG CCGATTGGAT
GCCGCTTGGG CTCGCTGGTC TAGACCTTGG ACCACTGCAG CGTGGGTATT TTTAACTCTC
GGTATAGCAC TGGGTTCTTG GTGGGCTTAT TACGAATTGG GTTGGGGTGG TTGGTGGTTT
TGGGATCCTG TAGAAAACGC TTCATTTATA CCTTGGCTGG TCGGCACCGC TTTATTGCAT
TCATTGGCGG TTACTGAAAA GCGTGGTGGC TTCAAAAGCT GGACAGTGTT ACTGGCGATC
ACTGCGTTCT CACTCTCTTT ATTGGGAACA TTTTTAGTGC GCTCTGGGGT ACTCACTTCA
GTGCATGCCT TTGCAACTGA TCCACGACGC GGTATTTTTA TTCTGATTTT TCTTTCCTTG
GTGGTGGGTT CTTCATTAAC CCTCTATGCA TGGCGAGCAC CTAAAAGTTC CTTGGGCGGC
AAATTTAATT TGAGCTCAAG AGAGACTTTT ATCTTGCTAG GAAATGTATT TTTAGTAGTG
TCCGCAGGCT CAGTACTGCT AGGAACGCTC TATCCATTAT TAATTGATGC ATTACACCTT
GGGAAGATTT CAGTAGGCCC CCCGTATTTC AATAGCGTAT TTGTGCCGAT CATGGTTCCC
TTGTTGGTTC TCATGGGAAT AGGCCCTTGG ACTAATTGGA AAAATACTAA TCTAATCCTT
GTGATTAAGC GCCTTTGGTT AGCAGGATTA GTTGCAGTAA TTGCTGGAGT GCTGATACCA
CTAATCATGG GCCAATTTAC TTGGCTTGCC GGGCTTGGTT TTCTACTAGC ATTTTGGGTC
ATTGCTTCCG GATGTATGCA GATTGTTCGT CAGGCCAAAG CAGGCAAGCC AACGCGTTCA
TTTATCGGTA TGCAAATAGC TCATCTCGGG ATTGCCATCT TTGTGATTGG CGTCACGATG
GTAGGTGCTT ATCAAGAGGA AAAAGATGTT CGCATGTTGG CTGGTGAATC GGTGACTGTT
GGTGGATATC AAATTCAGCT CCAAGGCGTT AATCCTGTAG CCGGACCGAA TTACAAAGCG
ATACGAGGTA GCTTTTTATT GAGCAAGGAT GGCGTTGCCC AAGCAACCCT AAACCCTGAG
AAGCGTAGCT ATTTTTCTTC TACGATGCCC ATGACTGAAG CGGCAATCAA TGCAGGCTTA
ACCAGAGATA TTTATGTTTC TTTGGGTGAA GAACTCGACG ATAAATCTTG GGCTGTTAGG
GTTTATTACA AGCCGTTTGT TGATTGGATT TGGGGCGGAT GTTTATTGAT GGCCTTGGGT
GGTGTTTTGG CGATATCCGA TAAGCGCTAT CGCATCAAAT TAAAAAGAGT GGGTTCATGA
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| Protein sequence | MIPEFGHYAL ILALCISLIQ GVLPLLGAHY GRREWLVLAR PAAQALFLLL AIAFGILAWS
FYVNDFSVLY VAEHSNSQLP VIYRLGAVWG GHEGSLLLWI FLLSTWTILV AQLSKALDEF
MVARVIGVLG LVASGLLLFV LTTSNPFERL LPAAQDGRSL NPLLQDPGLV FHPPMLYMGY
VGFSVAFAFA IASLLSGRLD AAWARWSRPW TTAAWVFLTL GIALGSWWAY YELGWGGWWF
WDPVENASFI PWLVGTALLH SLAVTEKRGG FKSWTVLLAI TAFSLSLLGT FLVRSGVLTS
VHAFATDPRR GIFILIFLSL VVGSSLTLYA WRAPKSSLGG KFNLSSRETF ILLGNVFLVV
SAGSVLLGTL YPLLIDALHL GKISVGPPYF NSVFVPIMVP LLVLMGIGPW TNWKNTNLIL
VIKRLWLAGL VAVIAGVLIP LIMGQFTWLA GLGFLLAFWV IASGCMQIVR QAKAGKPTRS
FIGMQIAHLG IAIFVIGVTM VGAYQEEKDV RMLAGESVTV GGYQIQLQGV NPVAGPNYKA
IRGSFLLSKD GVAQATLNPE KRSYFSSTMP MTEAAINAGL TRDIYVSLGE ELDDKSWAVR
VYYKPFVDWI WGGCLLMALG GVLAISDKRY RIKLKRVGS
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