Gene Pnuc_1289 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPnuc_1289 
Symbol 
ID5052249 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePolynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 
KingdomBacteria 
Replicon accessionNC_009379 
Strand- 
Start bp1360556 
End bp1361215 
Gene Length660 bp 
Protein Length219 aa 
Translation table11 
GC content46% 
IMG OID640471461 
Producthypothetical protein 
Protein accessionYP_001156067 
Protein GI145589470 
COG category[S] Function unknown 
COG ID[COG2976] Uncharacterized protein conserved in bacteria 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones17 
Plasmid unclonability p-value0.121968 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGCCTTTAG ACCTAGAAGA ACAAGAACAG TTAGACCAAT TTAAAGCGTT TTGGCAAAAA 
TACCGTAACT TGATTACTGG GGTGGCGACT GCTGCTTTGT TTGCTTATGC TGCCTACAGT 
GGATACCAGT GGTGGCGTAA TAACCAAGCT CTTGAAGCAT CCAAGCTTTA TGAAACGATG 
GTCAGTGCGA TTGCTAAAGG CGATAAGGAG CAGACTTTGC GTGCTGCTGA CGACTTGCAA 
AAAGACTTTG GTCGTACACC ATATGCTCCG ATGTCGAGTT TGGTTGCCGC CAGAATTGCG 
GCGGACGCTG GGGATAGTGC CAAGTCATTA GATTATTTAC GCTGGACTGC TAAGAACGCA 
TCCAATGAGG GATATTTAGC TTTGGCAAAA ATGCGTTTGG TCTCTCAGTT AATTGAGCGG 
GGCAGCGAGA AGGATTTTGC TGAAGCAGAT CAAATTCTAA AAGATAAGCC AGTTGCTGGA 
TTTGAGGCGC TATGGCTTGA GCGTCGCGGC GATTGGTACT TGGCTCAAAA GAATATTCCT 
GAAGCCAAGA ATAGTTATCA AGCGGCGTGG AAAAAATTAG ACCAAGATAA AGAATTTCCA 
GAAGAGGCGC GTCGCCTATT GAAGGTGAAG TTGGATGCCG TTGGAGGAGT TGCTCAGTGA
 
Protein sequence
MPLDLEEQEQ LDQFKAFWQK YRNLITGVAT AALFAYAAYS GYQWWRNNQA LEASKLYETM 
VSAIAKGDKE QTLRAADDLQ KDFGRTPYAP MSSLVAARIA ADAGDSAKSL DYLRWTAKNA 
SNEGYLALAK MRLVSQLIER GSEKDFAEAD QILKDKPVAG FEALWLERRG DWYLAQKNIP 
EAKNSYQAAW KKLDQDKEFP EEARRLLKVK LDAVGGVAQ