| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pnuc_1237 |
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| Symbol | |
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| ID | 5052874 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009379 |
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| Strand | - |
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| Start bp | 1300225 |
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| End bp | 1302093 |
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| Gene Length | 1869 bp |
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| Protein Length | 622 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 640471409 |
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| Product | extracellular solute-binding protein |
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| Protein accession | YP_001156016 |
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| Protein GI | 145589419 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG4166] ABC-type oligopeptide transport system, periplasmic component |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 0.469932 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCCGACCC CAAACCCTTT TCACCAATTT ACCCAATTCT TGCTATTAGC CTTACTGGTA
GGGCTTGAGA GTAATCTGGC CCAGGGTGCT CAGGGAATCG CCCAGTACGG TAAGCCCAAG
TATGCAGAGG GATTTACCCA TTTTGATTAC GTAAACCCCA ACGCCCCCAA AGGCGGAACA
TTAACTTTGC CTAATCCAGG CCAAAGAAAT AGCTTTGATA AGTTCAATCC GTTCACCTTG
CGTGGGATTA CTGCCCCTGG AATTGAGTTG ATGTTTGAGT CCTTAGCCGA GGGGAGTGCG
GATGAGGTTT CTAGTATTTA TGGATTAGTA GCTGATGATA TTCAAGTGGC TAATGATCAT
AAATCAGTCA CTTTTCATAT TCGCAACGAA GCAAAATTTT CTGATGGAAG TCCAGTCTTA
GCCGCTGATG TGAAATACAG TTTTGATACC TTGATGAGCG GTAAAGCCCA CCCCCGTTAC
AAAACGACTT TTGCTGATAT CAAAGAAGCA GTCATACTTT CTGATCGTTC TATTCGTTTT
GATTTTAAAA ATAACAATAC TGAGTTGCCT ATCTTGGCAG GCACCTTCCC AATCTTTTCT
CGTAACTGGG GCAAGCAGCC GGACGGCACC ATTATTCCAT TTGAGAAGCT CGCCTTTGAA
ACCCCAATCG GCAGCGGTCC TTATTTGATT GAATCTTTTA AGGCTGGTAA GTCTATTGTT
TATAAAAAGA ATCCTCAGTA TTGGGTGAAT CAACTCGAGA AGCCTTTAAA TCTGCGTGTC
GGTTTTTACA ACTTTGAGCG TGTGTTGTAC AAGTTGTATA GCGACGATGC AGTTCGCCTT
GAGGCCTTTA AAGCTGGTGA GTTCGATGCT TTGGTGGAGT ATCGCGCCAA GATCTGGGCT
AAAGGATATG TAGGCAGCAA GTTTGAAAAC GGCACCTTAC TGAAAAAAGC ATTTTTAAAT
CACAACGGTG CTGGCATGCA GGGCTTTGCC ATGAATGTAC GTAGGCCTTT ATTTCAGGAT
CCCCGGGTAC GACAAGCATT GGGTTATGCA TTGGATTTTG AATGGCTGAA TCGACAGATC
TTCTTTGATC AATACAGCCG TATCAATAGT TACTTTACTA ATAGTGATCT CAGCGCTAAC
TTTGATGGAC CTCATAAACC AACTGATGCT GAACTGAAGT TATTAAAGCC ATTAAAAGCG
CAATATCCAC AATGGGTTCC GGATGGAGTC TTCGGGCCCA TGCCAGCTGC ACCATCTACC
AAGCCGCCTA ATAGTCTGCG CCAAAACTTA CGTCAAGCGA GAGATTTACT AATGCATGCA
GGCTGGCAAT ATCGCGATGG CGCTTTGCGC AATGAAAAGG GTGAGCCATT TCGTTTTGAG
ATTGTGGAAG ACGGCGGATT CTTTTTGCGG GTGATTTCTT CTTATGTACG CAACCTCGAA
AAGCTGGGAA TACAGGTTGA TATTCGTACG AGTGACTTTG CTTTGCACCA AAAGCGCATG
AATGAATATG ACTTTGATAT GACTACTGTG CGTTTTCAGG ATTCACAAAA CCCGGGCAAT
GAACTGTGGG ATCGATTCGG CAGCCAAGCA GCCAAAGAAA AAGGCTCCGA TAACGTCATT
GGCATTCAAT CTCCCGTGGT AGATGCTTTG GTGGATTCCA TCACTAAGGC AAAGAATCGG
GATGAATTGC GCACTGCAGC GCGAGCCTTG GATCGCGTCT TGTGGAATAG TTACTACGTT
GTGCCGCAAT GGTACAACCC AACCCATCGG GTCGCATTTA GAAAAGAAAT GCGCTATCCC
GAGCCTCCCT TGTATTACTC TGCAGAGGCT TGGATTATGC AAAACTGGTG GAAAGAAGAG
TCTAAATAA
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| Protein sequence | MPTPNPFHQF TQFLLLALLV GLESNLAQGA QGIAQYGKPK YAEGFTHFDY VNPNAPKGGT
LTLPNPGQRN SFDKFNPFTL RGITAPGIEL MFESLAEGSA DEVSSIYGLV ADDIQVANDH
KSVTFHIRNE AKFSDGSPVL AADVKYSFDT LMSGKAHPRY KTTFADIKEA VILSDRSIRF
DFKNNNTELP ILAGTFPIFS RNWGKQPDGT IIPFEKLAFE TPIGSGPYLI ESFKAGKSIV
YKKNPQYWVN QLEKPLNLRV GFYNFERVLY KLYSDDAVRL EAFKAGEFDA LVEYRAKIWA
KGYVGSKFEN GTLLKKAFLN HNGAGMQGFA MNVRRPLFQD PRVRQALGYA LDFEWLNRQI
FFDQYSRINS YFTNSDLSAN FDGPHKPTDA ELKLLKPLKA QYPQWVPDGV FGPMPAAPST
KPPNSLRQNL RQARDLLMHA GWQYRDGALR NEKGEPFRFE IVEDGGFFLR VISSYVRNLE
KLGIQVDIRT SDFALHQKRM NEYDFDMTTV RFQDSQNPGN ELWDRFGSQA AKEKGSDNVI
GIQSPVVDAL VDSITKAKNR DELRTAARAL DRVLWNSYYV VPQWYNPTHR VAFRKEMRYP
EPPLYYSAEA WIMQNWWKEE SK
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