| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pnuc_1116 |
|---|
| Symbol | |
|---|
| ID | 5053018 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009379 |
|---|
| Strand | + |
|---|
| Start bp | 1160734 |
|---|
| End bp | 1162038 |
|---|
| Gene Length | 1305 bp |
|---|
| Protein Length | 434 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 45% |
|---|
| IMG OID | 640471286 |
|---|
| Product | phage integrase family protein |
|---|
| Protein accession | YP_001155896 |
|---|
| Protein GI | 145589299 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG0582] Integrase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 0.0425544 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | TTGGAAGAAG GTAAAAAAAT TAGCTTTACG GCACGAGGTC TTGGGTCAAT CATAAGCCCT
GGGTACCATG CTGACCCAGA ATCTAAGGGT CTATATATCC AAGTATCAAA AGGGGTAAAC
AACTTTAAGC GTAGCTGGAT TTTTCGCTAT ACCAGCCCCA CCCTATTTAA AAGACGCGAA
ATGGGTTTGG GATCCTTGGA GGCTCGGTCA TTAGCTGATG CTCGCCGAAA AACCCTTGAA
TTGCGTCAAT TGGTCATGGA TGGCATTGAC CCGACCGAGG ATCGCTGTAA GGCTAAAAGC
AAAAGAATTA CAGCTATTAA TAATGGCATC ACCTTTAAAG AAGCTGCCGA ACGCTGTATC
GAGGGAAGAA AAGCGGAGTG GAAGAGCTCT AAGCATGCTG ACCAATGGAG GAACACCATC
TCCACCTTTG CATATCCTGA GATAGGTGAA TTACGCGTAG ACCAGATCAA CACCAGCCAT
ATCGCCAAAT TACTAGAGCA AGAAATTAAA AACAAGAATG GCACTGTTGA GGGTACGTTT
TGGAATGTAC GCACCGAGAC CGCTACTAGG GTTAGACAAC GCATTGAGGT GATCTTTGAT
TGGTGCAAGG CCCATGAGTA CATCAAAGGG GATAACCCGG CACGCCTAAA AGGTGCGCTA
GGACATTTAC TACCCAAGGC TAAAAAGATT CAGAAGAAGA GCCATCACCC AGCCCTACCG
TTTCAGCGCA TTGGGGAATT TGTAAAAGAT CTTCGTGAAC ACAATGGTTA TTCTGCCTTG
GCATTGGAGC TATTGATTCT GACTGCCACT CGCACAAGCG AAGTTATTGA AGCCAAGTGG
ACAGAGTTCA ACTTAGAAAC TAAGGTGTGG GTAATTCCTG CGGCGCGAAT GAAGGCCGGC
AAAGAGCATC GCGTTCCACT AAACACTAGG GCAATGGAAA TCCTTGAACA TCTAAAAACT
ATCAGTGTGA GTAGTTATTT ATTTCCAGGA TCACTGCATA AAGAAGAGTC TCATCTTTCC
AATATGGCAC TACTTTCTAT GATGAGAAAG ATGCCAAAGT ATTCTGGATA TGTTCCCCAC
GGCTTTAGAT CAACATTTAG AGATTGGGCA GCCGAGACTA CCGACTATCC GAATGAGACC
GTTGAGCTAG CTTTGGCGCA CACCATTAAG AATAAAGCTG AGGCTGCCTA TAGAAGGCAG
GATCAGCTGG AGAAACGCAC AGTACTAATG GAAGAATGGG GCGCCATAGT AAATGCTGCA
ATTAATAAGA ATGAAAATCT ATCTACCATG ATAAAGAGCA GTTAA
|
|---|
| Protein sequence | MEEGKKISFT ARGLGSIISP GYHADPESKG LYIQVSKGVN NFKRSWIFRY TSPTLFKRRE
MGLGSLEARS LADARRKTLE LRQLVMDGID PTEDRCKAKS KRITAINNGI TFKEAAERCI
EGRKAEWKSS KHADQWRNTI STFAYPEIGE LRVDQINTSH IAKLLEQEIK NKNGTVEGTF
WNVRTETATR VRQRIEVIFD WCKAHEYIKG DNPARLKGAL GHLLPKAKKI QKKSHHPALP
FQRIGEFVKD LREHNGYSAL ALELLILTAT RTSEVIEAKW TEFNLETKVW VIPAARMKAG
KEHRVPLNTR AMEILEHLKT ISVSSYLFPG SLHKEESHLS NMALLSMMRK MPKYSGYVPH
GFRSTFRDWA AETTDYPNET VELALAHTIK NKAEAAYRRQ DQLEKRTVLM EEWGAIVNAA
INKNENLSTM IKSS
|
|---|
| |