Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Pnuc_0490 |
Symbol | |
ID | 5052017 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 |
Kingdom | Bacteria |
Replicon accession | NC_009379 |
Strand | - |
Start bp | 480665 |
End bp | 481339 |
Gene Length | 675 bp |
Protein Length | 224 aa |
Translation table | 11 |
GC content | 49% |
IMG OID | 640470644 |
Product | phosphoglycolate phosphatase |
Protein accession | YP_001155274 |
Protein GI | 145588677 |
COG category | [R] General function prediction only |
COG ID | [COG0546] Predicted phosphatases |
TIGRFAM ID | [TIGR01449] 2-phosphoglycolate phosphatase, prokaryotic [TIGR01509] haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED [TIGR01549] haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E |
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Plasmid Coverage information |
Num covering plasmid clones | 7 |
Plasmid unclonability p-value | 0.000155705 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAAGCAAA GCCCCTATCA CGGGATCTTT TTTGATCTTG ATGGCACTTT AGCTGACACA GCTCCAGATC TTGTAGCAGC GACCAATCAA TTGCTCATAG CTCGCAATCT GGCGCCCAAG CCTTATGAAT TTTTGCGACC ATATGCATCT GCTGGCGCTC GAGGTTTGCT TGAAGGCGCC TTTGGCATTA GCACTGACCA CCCTGACTTT GCAGTCTTAC GCGATGAGTT TTTTGCCAAT TACGAGAATG CATTGCATGT AGAAAGTAAA TTATTTGAGG ACATGGATAG CTTGCTTGAT CAAATGGATC AAGCCAATCT TCCCTGGGGA ATTGTGACTA ATAAGAGCGA GCGTTTTACC AACCCCCTGG TAGAGCTCAT GGGTCTGCAC AAAAGATCTG TATCCACTGT ATCGGGCGAT ACCACCGCTC ATGCAAAACC CCATCCCGAA CCCATCCTGC ATGCCGCACG ACTCGCCAAT GTCGACCCAA GCAAATCTCT TTATATCGGC GACGATATTA GGGACGTTGT AGCAGGCAAG GCGGCAGGAA TGAAGACCGT GGCTGCGGCT TATGGCTACT GTGGCTGTAA AGAGCCTCCT GAGGCCTGGG GAGCTGACTA TATCGTCAAC AGCCCTCTTG AATTACTGCA AATCATCTTT CCCAACAAGG TTTAA
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Protein sequence | MKQSPYHGIF FDLDGTLADT APDLVAATNQ LLIARNLAPK PYEFLRPYAS AGARGLLEGA FGISTDHPDF AVLRDEFFAN YENALHVESK LFEDMDSLLD QMDQANLPWG IVTNKSERFT NPLVELMGLH KRSVSTVSGD TTAHAKPHPE PILHAARLAN VDPSKSLYIG DDIRDVVAGK AAGMKTVAAA YGYCGCKEPP EAWGADYIVN SPLELLQIIF PNKV
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