Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Pnuc_0467 |
Symbol | |
ID | 5053614 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 |
Kingdom | Bacteria |
Replicon accession | NC_009379 |
Strand | - |
Start bp | 457558 |
End bp | 459570 |
Gene Length | 2013 bp |
Protein Length | 670 aa |
Translation table | 11 |
GC content | 45% |
IMG OID | 640470620 |
Product | TRAP transporter, 4TM/12TM fusion protein |
Protein accession | YP_001155251 |
Protein GI | 145588654 |
COG category | [R] General function prediction only |
COG ID | [COG4666] TRAP-type uncharacterized transport system, fused permease components |
TIGRFAM ID | [TIGR02123] TRAP transporter, 4TM/12TM fusion protein |
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Plasmid Coverage information |
Num covering plasmid clones | 19 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAATCAAA ACGTCATTGA CAACGAAACG CAAGAAAAAT TAGAAGCCTT TATCAAGCAG GAGGAAGGAG ACTCTAATGA TTACAAAGGG CTCCTAGCAA AGTTCATCAC TCTTGTCGCT GTAGGCATGT CTTTATTCCA CCTCTATGCT GCATATTCAA TCGTCCCAAC CCAAGAGCTC AGGGTGATTC ACGTTGCCCT AGTGCTGTTC TTAGTGTTTT TAAGTTTTCC TATTGCTGCA CGCTTTAAAA ATAGACTCAT GTGGTGGGAT GTGATTTTTG CGCTTATCTC CGTTTATGTT GCGTATTACA TATTGAGTGG TGGCGATGAT TTCATGGATA GAAACACCGC GCCAAATTCA ACGGATGTTG TGATTGGAAT TGGTTTAATC CTCCTCATTC TTGAAGGTGT CAGAAGAACA AATGGTTTGA TACTGGTGAG CGTTACCGTC CTATTCTTGC TCTATGCTCT TTTTGGCAAC TACTTACCTG CACCTTGGAC ACATAAAGGT TACGATTTAG ATCGTTTAGT CGGTTATATG TATATGACCC TAGAGGGGAT CTATGGCACA GCGGTTGATG TATCAGCAAC CCTGATTATT CTTTTCACTA TTTTTGGCGC CTTCTTACAG TTCACAGGCG CCGGAAAATT CTTCATCGAC TTTTCATTTG CAGCTATGGG TGGGAAATCA TCCGGAGTTG GCAGAACCAT TGTGATGTCT TCGTTCTTGC TGGGAGGCCC ATCTGGATCA GGTGTTGCTA CGACGGTTAC CGTAGGCTCA GTTGCGGCGC CAATGCTAGA TAAAGTCGGT TACGAGAAGA ATGCAGCGGG CGGCCTTTTG GCTGCGGGAG GATTGGGCGC CATCATTTCT CCTCCAGTGC TGGGTGCTGC CGCCTTCCTA ATTGCTGATT TTTTAAAGAT TTCGTATTTA GATGTATTGC TTATGGCAAC CATTCCTACC ATCCTTTTTT ACCTAGGCTT ATTTGTGATG GTGGAAATTG ATGTACGCAA ATACGGTATG AAGAACATTC ATTTTGAATC TACCGAGAGT GCATGGCAAT TAACTAAAAA ATATTGGTTC CACTTCTTCT CATTAATCTC CATTGTGGTG TTCATGCTGA TGGGCTTCTC GCCAGTTATG TCGGTATTTT GGGCAACGGT TGTATCAGCT CTATCCAGTA TGTTGCGCGA AGATACGGCG ATTATTCCTT GGACGTGGTT TAAAGGCAAA GAACCCATTC TGTCGGGCCT CTATAACTCC AACCTCACTA AGTCCCTGGC TGCAGGATCT ACTGGGGTGT TAGCGATTGC TGCAACTTGC GCAGGTGCGG GCTTAATTGT TGGTACCGTT ACGCTAACAG GTCTGGGCCT GAAATTTAGC TCTATTGTGA TTCAATATGC TGGCGGCTCA CTCTTGCTCA CCACTATCTT TACAGCGCTG GTAGTTTGGG TGGTCGGGCT TGCGGTACCA GTCACTGCGT CTTACATCAT TTGCGCTGTG ATTGCTGCGC CAGCACTGAT CAACTTAGGA GTGCCTGCAT TTGCAGCACA CATGTTCATT TTTTACTACG CTGTTCTATC TGAGGTCTCC CCTCCTACCG CACTTTCACC ATTTGCAGCA GCGGCCATTT GTAAGGGCAA CCCTTACAAA ACAACTTTGC AAACCTGGAA ATATGTCGCG CCCGCTATTT TGGTGCCCTT TATGTTTGTT CTGGATAAAT CTGGAGTGAG CTTATTGTTA ATGGGATCTA CTGAAGCACT TGAGCAGGCA GACTGGATGC AAATTGCTTG GATTTCATTT ACCGCAGTAG TGGGAATCAT TTGTTTGGCA GGTGGTCTAC AAGGTTGGTT TATTGAAAAA ACCAAAATTT TTGAGCGCAT CATCATGGTT GCTTCCGGGG TAGCTCTGGC ATACCCCTCT ACTGAGGCTG ACTTAGTTGG ATTTGTTGGC TTTGCTTTGG TTTTGGTTAC TCAAACCATC ACCCACTTCA AGCTCAATCC CCGATCCTCT TAA
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Protein sequence | MNQNVIDNET QEKLEAFIKQ EEGDSNDYKG LLAKFITLVA VGMSLFHLYA AYSIVPTQEL RVIHVALVLF LVFLSFPIAA RFKNRLMWWD VIFALISVYV AYYILSGGDD FMDRNTAPNS TDVVIGIGLI LLILEGVRRT NGLILVSVTV LFLLYALFGN YLPAPWTHKG YDLDRLVGYM YMTLEGIYGT AVDVSATLII LFTIFGAFLQ FTGAGKFFID FSFAAMGGKS SGVGRTIVMS SFLLGGPSGS GVATTVTVGS VAAPMLDKVG YEKNAAGGLL AAGGLGAIIS PPVLGAAAFL IADFLKISYL DVLLMATIPT ILFYLGLFVM VEIDVRKYGM KNIHFESTES AWQLTKKYWF HFFSLISIVV FMLMGFSPVM SVFWATVVSA LSSMLREDTA IIPWTWFKGK EPILSGLYNS NLTKSLAAGS TGVLAIAATC AGAGLIVGTV TLTGLGLKFS SIVIQYAGGS LLLTTIFTAL VVWVVGLAVP VTASYIICAV IAAPALINLG VPAFAAHMFI FYYAVLSEVS PPTALSPFAA AAICKGNPYK TTLQTWKYVA PAILVPFMFV LDKSGVSLLL MGSTEALEQA DWMQIAWISF TAVVGIICLA GGLQGWFIEK TKIFERIIMV ASGVALAYPS TEADLVGFVG FALVLVTQTI THFKLNPRSS
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