Gene Pnec_1067 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPnec_1067 
Symbol 
ID6183658 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePolynucleobacter necessarius subsp. necessarius STIR1 
KingdomBacteria 
Replicon accessionNC_010531 
Strand- 
Start bp928231 
End bp929442 
Gene Length1212 bp 
Protein Length403 aa 
Translation table11 
GC content50% 
IMG OID641671679 
Producthypothetical protein 
Protein accessionYP_001797856 
Protein GI171463743 
COG category 
COG ID 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones25 
Plasmid unclonability p-value0.540517 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones54 
Fosmid unclonability p-value0.0490295 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGCCGTTC ACCGCACCAA AGCATCGCAA CGCAATTCTC CAGAGGTGGA GAGGTTGGTG 
GCTGACGCTA TTTCTTTGGC TGCCTCTGGG AGTCAAATGG AGGATCGTTT TTGGGAAGAA 
CGTTTGAATG TGCGTCTGAT GCGCTTGCTC AAAAGTCAAA ATCAAAATGT CATTGATGCT 
GCCCTAGATC AAACCTTTCG TATCAATACC GTTGCATTTG AAGTTCTTGC TGATAGCGCA 
GAAACATTGG CTGAGTCTCT CAGGATTGTG CATGAAGGGC AGGAGTGGGA TGTGTTGTTG 
TTGGCCATGC CGATCGTCGC GCACACGCGC TATCAAATAC CCTCTGGTCC ACTACCGGCG 
GCTATCATTG AGTCAACATC CCAAGCTTTG CATAGCGCGA TTGCCTCAAC CGATACTCGT 
TTAGCCATCG TTCCTTGGTT GTATAGCATT GATCAAATGC CCCATTCGCA TTGTCAGACA 
CGTATCTTGA CCGAATCCTT AGCTAGCGCA GCTATCTCGG GAAAAGACGT TAAGCTTGAA 
TTGCGCGATA TGTCAGAAAC CATTGCCGTC TTGGCGGATC CTCGTTTTAT TATTGCGGCC 
TTAAGCGCGC CCGTAGGCTC CCCAATCTTC CGTTGGCAAG CAGAGCCGCC GGCTCGCCAG 
GAGCGTGGTG TGAGTTTGAT TGGCTGGCAA ACTGCGATGC AAGAGCCAAT TGCCTCTTTG 
TTGCCGGGTT GTGAGTTTGA ACTTCTTTTG CCGGAGGCCT ATTTCACAAA CTGCCGTTTA 
GCAGATAAAC ACGTTCGCCC ATTGAGTATT CGTGCGGCAG TGAACTTTCT TGAGAGTACT 
CTCGGAATTC TCCCTGCAGG CTTATCTTGT GTTGTTGGTG TCTTTGGTGA AGAGCAAGCG 
GACGAGTACC GTATATCGTT TAGCGCAAAA GGCTCTTCAG AGGTAATGTA TGGAGTGATT 
TGGCCGCTTT ACGCTCGCGA GAGCGTGGCA AGTGATGCAT TGAATGATTT ATCAGATGAT 
GAGAGCCCCA TCAAGAAGAT TTGCGATGCT TTGCACGATG CTGGTGTTGA GGATGTCTTC 
CGTCACGCCA TGTTGTTTGT CCCCGAGCTT TGCAATGACT GCGGTGCGCC GCTATTTCCG 
GATCGTTCTG GCGAAGCGGT GCATGCTGAA ATGCCAGATG ATGCGCCATC ACAGCAACCT 
TTGTTTCACT AA
 
Protein sequence
MAVHRTKASQ RNSPEVERLV ADAISLAASG SQMEDRFWEE RLNVRLMRLL KSQNQNVIDA 
ALDQTFRINT VAFEVLADSA ETLAESLRIV HEGQEWDVLL LAMPIVAHTR YQIPSGPLPA 
AIIESTSQAL HSAIASTDTR LAIVPWLYSI DQMPHSHCQT RILTESLASA AISGKDVKLE 
LRDMSETIAV LADPRFIIAA LSAPVGSPIF RWQAEPPARQ ERGVSLIGWQ TAMQEPIASL 
LPGCEFELLL PEAYFTNCRL ADKHVRPLSI RAAVNFLEST LGILPAGLSC VVGVFGEEQA 
DEYRISFSAK GSSEVMYGVI WPLYARESVA SDALNDLSDD ESPIKKICDA LHDAGVEDVF 
RHAMLFVPEL CNDCGAPLFP DRSGEAVHAE MPDDAPSQQP LFH