Gene Pnec_1034 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPnec_1034 
Symbol 
ID6183414 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePolynucleobacter necessarius subsp. necessarius STIR1 
KingdomBacteria 
Replicon accessionNC_010531 
Strand- 
Start bp900674 
End bp901489 
Gene Length816 bp 
Protein Length271 aa 
Translation table11 
GC content45% 
IMG OID641671646 
Producthypothetical protein 
Protein accessionYP_001797823 
Protein GI171463710 
COG category 
COG ID 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones27 
Plasmid unclonability p-value0.53712 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones67 
Fosmid unclonability p-value0.936486 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCAGCATA AATTTTCTTT AGGATTGGCT TTTGGATTAA TGGCTTCCTT AATAATGACG 
TCATCATCAG TCTCGGCTCA AAAGAGCGCA ACAGATGATA TTGCTAAGTA CCGCGAGATG 
ATCGCTGACG GCAACCCTTC AGAATTGTAT GAGGCAGCGG GTAAAGATCT ATGGAAGAAG 
CCTGCCGGAC CTAAGAATGC CACGCTAGAA AAGTGTGATT TGGGTCTAGG GCCTGGTGTT 
GTTAAGGGTG CGGCAGCTCA GTTACCTCGT TACTTCAAAG ATACCAATAA AGTACAAGAC 
CTCGAGTCAC GTTTGATGAC TTGTATGCAA GTTTTGCAAG GTAGGGACCC GCAAGAAATG 
ATTGATGCAC CTTTCCAAAA AGGTCCTAAA AAGGATATGG AGGCGATTGT TGCTTACGTG 
GTTACTTTGT CAAAAGGTGA CAAGATTAAG GTGAGCACCA ATTATCCCAA GGAAAAGGAG 
ATGTATGAGC TCGGTAAGCG CGCATTCTTT TACCAAGGTG GTCCAATGGA TTTCTCTTGT 
GCATCTTGCC ATGCTGAAAA TGGTAAGCGT ATTCGCTTGC AAGATTTGCC TAACTTAACG 
GAGCAAAAGG GCGCCGCTAT GGGTTGGGGT TACTGGCCTG CTTATCGCGT ATCTAGCGGT 
CAATTTTGGA CTATGCAACA GCGCTTGAAC GATTGCTATC GTCAACAGCG CTTCCCATTC 
CCAATCTATG GATCAGATGT CACGATTGCT CTGACTATGT ATATGTCTAA GACTGCAAAT 
GGCGGCACTG TTGAGACTCC TGGATTAAAG CGTTAA
 
Protein sequence
MQHKFSLGLA FGLMASLIMT SSSVSAQKSA TDDIAKYREM IADGNPSELY EAAGKDLWKK 
PAGPKNATLE KCDLGLGPGV VKGAAAQLPR YFKDTNKVQD LESRLMTCMQ VLQGRDPQEM 
IDAPFQKGPK KDMEAIVAYV VTLSKGDKIK VSTNYPKEKE MYELGKRAFF YQGGPMDFSC 
ASCHAENGKR IRLQDLPNLT EQKGAAMGWG YWPAYRVSSG QFWTMQQRLN DCYRQQRFPF 
PIYGSDVTIA LTMYMSKTAN GGTVETPGLK R