| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pnec_0355 |
|---|
| Symbol | |
|---|
| ID | 6182896 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Polynucleobacter necessarius subsp. necessarius STIR1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010531 |
|---|
| Strand | - |
|---|
| Start bp | 321921 |
|---|
| End bp | 322739 |
|---|
| Gene Length | 819 bp |
|---|
| Protein Length | 272 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 49% |
|---|
| IMG OID | 641671060 |
|---|
| Product | protein of unknown function DUF81 |
|---|
| Protein accession | YP_001797259 |
|---|
| Protein GI | 171463146 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG0730] Predicted permeases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 34 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 62 |
|---|
| Fosmid unclonability p-value | 0.397221 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGACTACT CAATACTAAT TGCCCCATCC CTAGGCCTGA TTGTAGGTTT ACTAATGGGC
CTAACCGGTG CTGGAGGCGG AATTCTGTCC GTTCCTTTGT TGGTATTTGT CCTGCACCTC
CCAATAGCCG ATGCGGCGCC AATCTCCCTC TCGGCGATTG CGCTCTCCGC AGGGGTTGGC
GCACTACTCA GTCTAAGAAA TGAGATCTTG CGTTACAAGG CAGCGGGCTT CATGGCTATA
TTTGGACTCA CTCTTTCTCC GCTGGGTCTA TGGGTCGCGC AAAGAATTCC CAATGCGCCA
CTACTGATTC TTTTTAGCTG CACACTATTT TTTGTCTCAA CTCGTTTACT ACTGCAGGCT
AGAAGAGAAA TTCTTCGGCT TCCCAATCCA AAACGGAGGC CACCTCCGTG CTTGCTTAAT
CCCGAAGTTG GTAAATTAGA TTGGAATATC CCCTGCGCCA GATCATTGAT GCTTTCTGGA
TGTTTAGCGG GCTTCCTATC TGGGTTGCTA GGTGTTGGTG GTGGCTTCGT TATTGTCCCC
GCCTTAAAGC GCTATACCGA TTTACCAGTG CAATCAATTG TTGCTACTTC GCTAGGTGTG
CTTGCGATTG TTTCTGGTGG CGGAGTAGTA TTTTCTGCAA TCTCGGGAAC TCTTGATTTA
GCGCTTGCAA CACCTTTCTC CCTCGGCGCC TTATGCGGCC TAATCATTGG CCGAGCGGTT
GGCAAAAAAT TAAGCGGTCC AAGACTGCAA CAAATTTTTG CCCTACTCAC ATTTGGGGTA
GCGATCAGCT TGACCATTAA AGGCATCAAT GCCTTATGA
|
|---|
| Protein sequence | MDYSILIAPS LGLIVGLLMG LTGAGGGILS VPLLVFVLHL PIADAAPISL SAIALSAGVG
ALLSLRNEIL RYKAAGFMAI FGLTLSPLGL WVAQRIPNAP LLILFSCTLF FVSTRLLLQA
RREILRLPNP KRRPPPCLLN PEVGKLDWNI PCARSLMLSG CLAGFLSGLL GVGGGFVIVP
ALKRYTDLPV QSIVATSLGV LAIVSGGGVV FSAISGTLDL ALATPFSLGA LCGLIIGRAV
GKKLSGPRLQ QIFALLTFGV AISLTIKGIN AL
|
|---|
| |