| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pnec_0006 |
|---|
| Symbol | |
|---|
| ID | 6183136 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Polynucleobacter necessarius subsp. necessarius STIR1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010531 |
|---|
| Strand | + |
|---|
| Start bp | 6260 |
|---|
| End bp | 7027 |
|---|
| Gene Length | 768 bp |
|---|
| Protein Length | 255 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 47% |
|---|
| IMG OID | 641670741 |
|---|
| Product | ABC transporter related |
|---|
| Protein accession | YP_001796951 |
|---|
| Protein GI | 171462838 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0411] ABC-type branched-chain amino acid transport systems, ATPase component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 31 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 57 |
|---|
| Fosmid unclonability p-value | 0.112174 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGATTGC AAGAAACAAT ATTAAAAACA ATTGGACTGG GGAAATCTTT CAAAGGATTT
TCTGCGGTCA CCGATGTGAA CTTAGATGTC ACCAGGGGAA CCATTCATGC TTTGATTGGC
CCTAATGGGG CAGGTAAAAC CACTTGCTTT AATTTGCTCA CCAAGTTTTT GGAGCCCAGT
AGCGGCCAAA TCTTGTTTAA TGGTTTTGAC ATCACCAACG AAGCCCCAAC ACAAATTGCG
CGTCGGGGGG TTATTCGATC CTTTCAAATT TCGGCGGTTT TCCCCCACCT AACGGTTCTC
GAGAATGTTC GTGTTGCGCT GCAGCAAGGA TTGGGAACTG AGTTTCATTT TTGGAAGTCT
GGTAATTCGT TAAACGTTTT AAACGAGCGA GCCTTAGAGC TCCTTCACGA GGTTGGTTTG
GAGGATTTTG CGCACGAAGA AACTTTAAAT CTGGCTTATG GTCGCAAAAG GGCGCTCGAA
ATTGCAACTA CGTTAGCTAT GGAGCCGGAG CTAATGCTGC TGGATGAGCC CACACAAGGT
ATGGGCCACG AGGATGTTGA GCGTGTAACC GAGCTAATTG ACCGCGTCGC CAGGGGGCGC
ACGATCCTTA TGGTTGAGCA CAACATGAAG GTTGTTTCTT CGATTGCCGA TCGTATTACT
GTATTGCAGC GAGGCTCAGT TTTGGCTGAG GGGTCTTATC ACGAGGTTTC TAACAACTCG
TTGGTTGTGG AGGCTTATAT GGGAAGCCAT GGGGGAGACA ACCTATGA
|
|---|
| Protein sequence | MRLQETILKT IGLGKSFKGF SAVTDVNLDV TRGTIHALIG PNGAGKTTCF NLLTKFLEPS
SGQILFNGFD ITNEAPTQIA RRGVIRSFQI SAVFPHLTVL ENVRVALQQG LGTEFHFWKS
GNSLNVLNER ALELLHEVGL EDFAHEETLN LAYGRKRALE IATTLAMEPE LMLLDEPTQG
MGHEDVERVT ELIDRVARGR TILMVEHNMK VVSSIADRIT VLQRGSVLAE GSYHEVSNNS
LVVEAYMGSH GGDNL
|
|---|
| |