| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pnap_4606 |
|---|
| Symbol | |
|---|
| ID | 4685495 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Polaromonas naphthalenivorans CJ2 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008758 |
|---|
| Strand | - |
|---|
| Start bp | 180452 |
|---|
| End bp | 184306 |
|---|
| Gene Length | 3855 bp |
|---|
| Protein Length | 1284 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 58% |
|---|
| IMG OID | 639826452 |
|---|
| Product | superfamily I DNA/RNA helicase |
|---|
| Protein accession | YP_973616 |
|---|
| Protein GI | 121583175 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG1112] Superfamily I DNA and RNA helicases and helicase subunits |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 55 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCAAATC TGTATATCTG GATCGATGAT CATGAAAAGC TGGATAGCTC CATACGCAAG
CTCCACAGGA TAGCCGGCTA TTTTCCCGAA GGAAGACGCG ACAGCGATCC TGTCAGGGAC
ATGCTGGACT GGGTGCTTCC ACACGGCATG CCATTGCAAT TGCTCGCGGC TAACACCAGT
TTGGTTCCCA ATCAGGACGC CCGAATCATG CTGGCCTTGC GCCCTGTCTT GGGTGTCGGG
CGCAACTGGC CATTCCCCGC AGGTCGCTCT TTGGGATTGC GCGGTTATTG GCCCCGGGCC
ACCCCCAGCC CTGTCTTTCT TCTGCAGGAA GTTTTCGAAA TTTCCGATTC ACCGCCCAAG
GAATTTGAAA GCCTTTTGGA CGTCATCGTC TACCAGGTGG ACCCTCGTGA CAACCGGCAG
GCGCGCACTG ACAACGTGCT GAACAACAGC CTTGCTGAAG CATTACCGCC AATCTCGCTG
ATCACCCAAA GGCGCCTGAC CGAATGGAGT GACTTTCTGG CCTGGAAACG AAAACTCGTC
CAGGCTAATT CGCTGGGGCT GCGCTACACC GGTCGCAAAT GGAAGGGTGA CGATAGCCTT
GCATTCGATG TTGTGGCTGA AAATCTCGAG GTGTTGAGCG CGTGTCAAAA AGGCATTGCC
CGCGATGACC TCTACGCATT TCCCCTGGAA GCCTCAGAAG ATCCATGGAT CTACAGAGTT
CCAACGACTC CGCCCAAGGG ACGACAACGC AAATTTGAGA TGGGCCGAGT CAAAGGCTCC
CAGAGGCTGG ACGTGGGAAA CCGGTTAAAT CTAGACTGGG GCAACGAAGT TCGGATCGAA
GTTGTGGTTG ATTTGAGCAA CGATAACCTT GACCAGCTTT CCAACGCGGA AACACCGTCC
GAGGTAAGGG CTGGCCTTTT AGAACAGATC CCGGAGGAAG GATTCCTCTC GATCTCGCGC
GCGGGTGATC TTTCACTCAT ACGTCGCCAT GAACAAGCCG TGCAAAAGTT GCAGACCCAA
GGAGGGTATT CGCCCTACCT GGCAGCCTAT CTTTTCGACG TGAAGTGCGC GCAGTCGTCG
CTCCAGCTTC CGACCCTGTC AAACTGGATC AACAACCGCC TGAATGACTC GCAGAAAATT
GCAGTTCAAA AAATGCTCGC CGCGCAGGAT CTGTGCATGC TGCAGGGACC GCCAGGGACC
GGCAAAACGA CTGTCATCGC CGAAGCGATC CTTCAGGCCG TGAGCCGCGG CGAAACGGTG
CTGTTGGCGT CGCAGGCACA CACGGCCGTC GACAATGCAT TGGGCCGCTT GAACTCGTCC
CCCAACGTGC GTGCCATTCG CCTGGGTCAG GAAAGCAAAG TCACTGCCGA AGGCAAGGCC
TTTGTTCAAA GCGGCTCCTT GAAACGCTAC TACCAATCCT TGGAAAACCA CGCCAGTAAG
CGCTACCTGA CCCGTTGGGG CGATTCGGAC GCCGAAACCG CCCGTTGTTC AGCATGGTGT
GAAAAGGCTG ACTATGCCTT GAAGGATTGC ACGGACGCCC AGCACAAGCT GAGCGCTCAT
GCACTTGAAT CGGCCGCTTT GACCTCGCAG CGGGACCTGG CCTGGCAAAC GCTGCAATCA
GCCGCCCAAC AGCAGGCTGA ACAGGAGACG ATGCGACACA TCCTAACCGG ACTGGCCGCA
AGCGTGCGCG CCGCTATCGC TGGCGAAAGT CCCGAGGACG CCCAAGTGCT GCCAAGCAAC
CTCCACGGGC AGGCAGAGGC GCTGCTGCAG GAGATTGTGA GGCTCTCAGT TCATGGCGTT
AATCTGAAAA GCAGCTGGAC GGACTGGCAG CACCTGCACC ACCAGCGATC ACAAAACCTG
AATCTGGGAC TGAGGGACTG GTTGGGTTTG CGCATGCAGT TGCCCCAGCT TCGATCGGAT
GTGGCGCGCC TGCAGGCCGC GCGCACGGAC ACCCTGCAGG ATCCTCAAAC CCGGCTGAAC
ATGCAGGCCC TGGAATCTCA GATTGAGGCC TTGTCGAATA GGCTTGAGGC GGGCGAAGAC
GTTGCCGGAC AGTGGCGGAC AAGCCGCGCA CAACTCAATG CCCTCAAGCA GAACACGACG
AATGCACTGG ACGTTGCGCT GTACCGACGT CTGTTCGAGG ACGCCGAGCA GTTGCTGGCA
CCTGGCTCCA CAGCTGCGGA ACTGGCATCC CGTCTGAGCG CCCGTCTGGC GGCGGTAGAA
GCAGCAGATT TGGGCATTGA AAATGCCGCC GGCCGCTTGC TCATCGAGAT CGAACAGCGC
ATTGCTGCCA TACCCAATGC AGTGCAGGCA GACGAACTGC CCTGGAAGAC GGCCGATCAA
ATCCTGAAAA TCCATTCGGC TCAGCAAGAC CGACTCGAAT CATTGGCTCT CACCGTTGAG
GCCAAGGCCG AGTGCTTGCT GGACAAGCAA CTTGTAGACC CCAGTTTTCC AGCGGACTCC
GTGCGCCCAT CTATCGTACT GTCCGAGCAA ATCGCCCATG TCCGCGCCCA GTTTCTCGAG
CGCCAATCTG CCCGCGATGA AGAGAACGTG ACGCGAACTG CCTGGCAACC GATCCTGGCA
GCGTGGGTGG CTGACCTGGC AGGCGCCGAT GCCCCTGCCC GCGACTGGGA AGTGATGGGC
CACGAATGGC CCCGATTGTG CAATGTGGTC GCCATTACCT GCAACGAACG CGACGCCACC
CTGGAGGAGA TTGGCCAGAC CGGGTTCGAC ATGGTGATCG TGGATGAAGT CAGCAAGGCG
ACGCCTCTGG AACTGCTCCT GCCACTGATG CGCGCCCGGC GCGCCGTGCT GGTGGGTGAC
CATCGCCAGC TGCCACCACT GTTTCAGGAA GGCACCGATG CCGTGACGTT TGCCGATGCG
GTCGACGCCG CAGAAGAATC CGCTGCAGCG AACTCAGCGC TGACCCCGGA CAACCTGAAG
CGTTTTGAGC GCATGGTGAC TGCATCCTTG TTCAAGGAAC ATTTCGAAGG CGCGGACGTT
AGCATCCGGG CGCGTCTCAA CGTCCAGTTC CGCATGCACC CACAGATCAT GGATCTGGTC
AACCACTTTT ACGAGCGTCA GTTGACTTGC GGCCTGAAAG ATCCGGACCG TGAACGCGCC
CACCCCTTTA CCCTGTTGGG AGCGCATGGC CAGCCTCTGG TGACGCCAAA AGACCACGTC
TTGTGGGTGG ACACGTCGCG CGATCTCCAC GGGAACATTT GCAGTGAAGA CCTGGATGCC
AGCGGACGGC CCATGCGCAG CAACCGAATG GAGGCCGAGC TGATCGCGCG CATGCTTGTG
CTGTTGAATG CACAAGCGGC ACTCAAAGGT TATTCCCCGC AGAAAAGACT TGAGGTGGGT
GTCGTTTCTT TTTATGCGGG GCAAAACCGA TCCATCAAAA AAGCGATGGA CGCTGTCACC
AAGAATGGGC AATTTGATTG CCTGGACGTG GAAATCAACA CCGTCATCCG CTACCAGGGC
AAGGAAAAAG AAGTGATTTT TATCAGTCTG GTCCGAAACG ACGGGCGCGA TCCGGCCAGG
TCCAACGGCA TCGCTCCCCG GCGCTCGAGC CGGGCAAACG TTGCGCGGTA TGAATTCATC
AACGTGGCCC TGTCGAGGGC GAAAAGCCTG TTGGTGGCGA TGGGCGCGCG CAGCATGTTT
GAAACGTATG AAGTCAAGCT TCCCAACATG GACGGCCCGG GCCACAAAAC CCGGATGGTG
TACCGCCACA TTTTTGACCA ACTGCAAAGG GATGCCCATA TGTGCGAGGC CCGCGATGTC
ATGCACGCGC CATCGACCGA CCGACCGCCA GTGCAGCGCC GACAGGGCGT CTGGGCAGAA
GGGCGCAGAC GATGA
|
|---|
| Protein sequence | MANLYIWIDD HEKLDSSIRK LHRIAGYFPE GRRDSDPVRD MLDWVLPHGM PLQLLAANTS
LVPNQDARIM LALRPVLGVG RNWPFPAGRS LGLRGYWPRA TPSPVFLLQE VFEISDSPPK
EFESLLDVIV YQVDPRDNRQ ARTDNVLNNS LAEALPPISL ITQRRLTEWS DFLAWKRKLV
QANSLGLRYT GRKWKGDDSL AFDVVAENLE VLSACQKGIA RDDLYAFPLE ASEDPWIYRV
PTTPPKGRQR KFEMGRVKGS QRLDVGNRLN LDWGNEVRIE VVVDLSNDNL DQLSNAETPS
EVRAGLLEQI PEEGFLSISR AGDLSLIRRH EQAVQKLQTQ GGYSPYLAAY LFDVKCAQSS
LQLPTLSNWI NNRLNDSQKI AVQKMLAAQD LCMLQGPPGT GKTTVIAEAI LQAVSRGETV
LLASQAHTAV DNALGRLNSS PNVRAIRLGQ ESKVTAEGKA FVQSGSLKRY YQSLENHASK
RYLTRWGDSD AETARCSAWC EKADYALKDC TDAQHKLSAH ALESAALTSQ RDLAWQTLQS
AAQQQAEQET MRHILTGLAA SVRAAIAGES PEDAQVLPSN LHGQAEALLQ EIVRLSVHGV
NLKSSWTDWQ HLHHQRSQNL NLGLRDWLGL RMQLPQLRSD VARLQAARTD TLQDPQTRLN
MQALESQIEA LSNRLEAGED VAGQWRTSRA QLNALKQNTT NALDVALYRR LFEDAEQLLA
PGSTAAELAS RLSARLAAVE AADLGIENAA GRLLIEIEQR IAAIPNAVQA DELPWKTADQ
ILKIHSAQQD RLESLALTVE AKAECLLDKQ LVDPSFPADS VRPSIVLSEQ IAHVRAQFLE
RQSARDEENV TRTAWQPILA AWVADLAGAD APARDWEVMG HEWPRLCNVV AITCNERDAT
LEEIGQTGFD MVIVDEVSKA TPLELLLPLM RARRAVLVGD HRQLPPLFQE GTDAVTFADA
VDAAEESAAA NSALTPDNLK RFERMVTASL FKEHFEGADV SIRARLNVQF RMHPQIMDLV
NHFYERQLTC GLKDPDRERA HPFTLLGAHG QPLVTPKDHV LWVDTSRDLH GNICSEDLDA
SGRPMRSNRM EAELIARMLV LLNAQAALKG YSPQKRLEVG VVSFYAGQNR SIKKAMDAVT
KNGQFDCLDV EINTVIRYQG KEKEVIFISL VRNDGRDPAR SNGIAPRRSS RANVARYEFI
NVALSRAKSL LVAMGARSMF ETYEVKLPNM DGPGHKTRMV YRHIFDQLQR DAHMCEARDV
MHAPSTDRPP VQRRQGVWAE GRRR
|
|---|
| |