Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Pnap_4065 |
Symbol | |
ID | 4686583 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Polaromonas naphthalenivorans CJ2 |
Kingdom | Bacteria |
Replicon accession | NC_008781 |
Strand | - |
Start bp | 4338898 |
End bp | 4339692 |
Gene Length | 795 bp |
Protein Length | 264 aa |
Translation table | 11 |
GC content | 63% |
IMG OID | 639837078 |
Product | extracellular solute-binding protein |
Protein accession | YP_984277 |
Protein GI | 121606948 |
COG category | [E] Amino acid transport and metabolism [T] Signal transduction mechanisms |
COG ID | [COG0834] ABC-type amino acid transport/signal transduction systems, periplasmic component/domain |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 10 |
Plasmid unclonability p-value | 0.0712099 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 29 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAAATTCA AGTTCGCCAC GGCGCTCACC GGCCTGCTCG CCGGACTCGC TCTCCTGACG TCCGTGCCGG CCCAGGCCGA CGATTCGCTC ACGGCCATCA TGGCCAGGAA GTCCATCTCG CTGGGCATCG CCACCGACTT CCCTCCCTAT GGCTTCATGA GCCCCGACTT CAAGCCGCAG GGCCTGGATG TGGCGGTGGC GCAGCTGATC GCCGACAAGC TCGGCGTCAA GGCCGAAATG ACGCCGGTCA GCACGCCCAA CCGGATTCCC TACCTGCAGA CCAAAAAAAT CGACCTGATC GTTTCGTCGC TCGGCAAGAA TCCGGAGCGT GCCAAAGTGA TCGACTTTTC GGTGGCCTAC GCACCGTTCT ACCAGGCCGT CTTTGGCCCC AAGGCGCTCA GCATCAAGAG TTTCCAGGAT CTGGCGGGCA AGTCAATTGC CGTGACGCGC GGCACGATTC AGGATGACGT GCTTCAGCAG GTGGCGCCGC CCACGCTGAA GATCCAGCGC TTCGAGGACG ACAACTCGAC CGTGGCGGCT TTCGTGTCGC AGCAAACGCA GCTGCTGGCG ACCGGCGCCG CCGTGGCCGG GGTGGCTATC CAGAAGAATC CGCAAATCCA GGCCGAGTAC AAGCTGCTGC TGAAGGACTC GCCCAATTTC ATCGGTGTGC GCAAGGGCGA AACCGCATTG CTCGACAAGG TCAACGAGAT CCTGCGCCAG GCCAAGGCCG ATGGCACGCT CAACACCTAC GCGCAGCGCT GGCTGGGCCG CGGCCTGGGC GAGCTTCCGG AATAA
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Protein sequence | MKFKFATALT GLLAGLALLT SVPAQADDSL TAIMARKSIS LGIATDFPPY GFMSPDFKPQ GLDVAVAQLI ADKLGVKAEM TPVSTPNRIP YLQTKKIDLI VSSLGKNPER AKVIDFSVAY APFYQAVFGP KALSIKSFQD LAGKSIAVTR GTIQDDVLQQ VAPPTLKIQR FEDDNSTVAA FVSQQTQLLA TGAAVAGVAI QKNPQIQAEY KLLLKDSPNF IGVRKGETAL LDKVNEILRQ AKADGTLNTY AQRWLGRGLG ELPE
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