| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pnap_3727 |
|---|
| Symbol | |
|---|
| ID | 4686684 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Polaromonas naphthalenivorans CJ2 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008781 |
|---|
| Strand | + |
|---|
| Start bp | 3968535 |
|---|
| End bp | 3969872 |
|---|
| Gene Length | 1338 bp |
|---|
| Protein Length | 445 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 639836745 |
|---|
| Product | integral membrane sensor signal transduction histidine kinase |
|---|
| Protein accession | YP_983944 |
|---|
| Protein GI | 121606615 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG4191] Signal transduction histidine kinase regulating C4-dicarboxylate transport system |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 0.124248 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 14 |
|---|
| Fosmid unclonability p-value | 0.045206 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAACATCC TGCGTCTGCG CAATGACTCA GCCTATCGGC TGGAATTGCA CGAGCATTTG
CTGTTTTACA GCCGCATCAC CTGTGTCGTG ACCATCGTCC TGACACTGGG CGGCGTGGGG
CTCGACAGGG CGTTTTATCC AGCCTATGCA GGCGACTTCG GCTGGGCGCG TGTCTGCGCG
TCCCTTCTTG TGGGCCTGGT GCTTTTAAGC TACAGGCTGC CCTGGGGCCG CCGCAATTTG
CGTCCGCTGA CCTACCTCTG GCTCTGCATC CCCCAAGCCA TGATCTGCTG GATGATCTAC
CGCACCGATG GCGAGCAGTC GATCTACTTC GTGGGCTTGA CGTTTGCGCT CAGCGGCGTA
GGCTTTTTCC TGCCCTTGTC GGTGATCGAG GCGCTGGCTT TTGGCGGCGT CACCTTGCTG
GGCTATGGCC TGGCCTGCAT GCTGCGCACG GGCGGCATCC AGGACTTCAA CGCATGGCTG
GGCAGCAGCA CCTTCGTGCT GTTCTATACC GTCATCTGCG TGGTGATTGC GATCTACAGC
GACAAATGGC GCTGGCTGTC GTTCCAGTTC AAGACCGAGG TGCGCAAGAA AAACATCGAA
CTCACCGAAA CCAACCGCGC CCTGGCCGAA GTCAAGGGCC AATTGATCCA GCGCGAAAAA
ATGGCGGCCC TGGGCACCTT GTCGGCGGGC CTGCTGCACG AGGTCAACAA CCCGGTCAAC
TACAGCCTGA TGGCGATCAA CATGGCCCTG ATGGACCCGG CCGCCGCGCA AAGCGCCGAC
CTCAAGGAAA GCCTGACCGA CGCGCGCGAA GGCATGCAGC GCGTGCAAAA CATCGTCTCC
GACCTCAAGA CCTTTGCCTA CCAAAAGCCC GGCGTGGACA GCCAGCGCGT GTTCCTGCTC
GAAAAAGCCA TCCAGTCCGC CCTGCGCCTG ACGAGTTTCG AGCTCAAGGG CATCAAGGTG
GAACTGGCGC TGCCGCAAGA CACCCATGTC CAGGGCGACG AGCCGGCCAT CATCGGCGTG
CTGATCAACC TGCTGAGCAA TGCCGCGCTG GCCTTGAGCG GCGCGGCGCG CGAGCAGCCG
CGCATTTCCC TGCGCAGCGA ACACCGCAAC GGGCGCCTCT GGCTGGCGGT GCGCGACAAC
GGCACCGGCA TTGCGCCCGA GAACATCGGC CGCGTGCTCG AACCCTTCTT CACCACCCGC
GACGTGGGCG CCGGCCTGGG CCTGGGCCTG AGCATGTGCT ACAGCATCAT CCAGCGCCAC
GGCGGCCTGC TGTCGGTCAG CAGCGAGTTC GGCGCGTGGA CCGAATTTTC CATCGACCTG
GCGGTGCCCC AGCACTGA
|
|---|
| Protein sequence | MNILRLRNDS AYRLELHEHL LFYSRITCVV TIVLTLGGVG LDRAFYPAYA GDFGWARVCA
SLLVGLVLLS YRLPWGRRNL RPLTYLWLCI PQAMICWMIY RTDGEQSIYF VGLTFALSGV
GFFLPLSVIE ALAFGGVTLL GYGLACMLRT GGIQDFNAWL GSSTFVLFYT VICVVIAIYS
DKWRWLSFQF KTEVRKKNIE LTETNRALAE VKGQLIQREK MAALGTLSAG LLHEVNNPVN
YSLMAINMAL MDPAAAQSAD LKESLTDARE GMQRVQNIVS DLKTFAYQKP GVDSQRVFLL
EKAIQSALRL TSFELKGIKV ELALPQDTHV QGDEPAIIGV LINLLSNAAL ALSGAAREQP
RISLRSEHRN GRLWLAVRDN GTGIAPENIG RVLEPFFTTR DVGAGLGLGL SMCYSIIQRH
GGLLSVSSEF GAWTEFSIDL AVPQH
|
|---|
| |