| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pnap_3313 |
|---|
| Symbol | |
|---|
| ID | 4688542 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Polaromonas naphthalenivorans CJ2 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008781 |
|---|
| Strand | + |
|---|
| Start bp | 3513109 |
|---|
| End bp | 3515700 |
|---|
| Gene Length | 2592 bp |
|---|
| Protein Length | 863 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 639836326 |
|---|
| Product | TP901 family phage tail tape measure protein |
|---|
| Protein accession | YP_983532 |
|---|
| Protein GI | 121606203 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG5283] Phage-related tail protein |
|---|
| TIGRFAM ID | [TIGR01760] phage tail tape measure protein, TP901 family, core region |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 6 |
|---|
| Plasmid unclonability p-value | 0.219365 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 33 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGCAACA ATTTACGCCT GCAGGTCATC CTGCAAACCA TCGACAAAGC CAGCGCTGTG
CTCAAGAAGA TCCGGGGCGG CAGCAACGAT GCATCCCAGG CTCTCAAGGC AACCCGCGAC
AAGCTCAAGG AACTCAACGC CGCCCAGAAA TCCGTCTCGG ACTTCCGCGA GCTGCGCACG
GGCCTGAGCA CCACCAGCCA GCAACTCAAA GCCGCACAGG CCCACGTCAA GCAACTGGCT
GGCGCGCTGT CCGCATCCGG CCCGCCGACC GCAGCCATGG TCCGCCAGTT CGAGGAGGCC
AAGCGCACCG CTGGCAACCT GGGCGCGCAG TTCCATCGCC AGAGCCAGCA GGTCAACGCC
CTGCGCGAAC AGCTCAAGAC CGCCGGCATC AGCACCAGCA ACCTCGGCAC GCACGAGCGC
CAGCTGCGCG CCGACATCGA GGCCACAAAC AAAAGCCTGG AAGCGCAAAA GCAAAAGCTC
AAGGCCGTGG CCGACCACCA GCGAAAGCTC AGCGCCCTCA AAGCCAGCCA CGCCAGGGCA
ATGATGCAAA CCGGCATCCT GGCCGCCGGC GGCGTGGGCG CCATGGCTGC CGGGCGCGGC
ATGGCCCGCC CAGTGGGCGC CGTCCTGGGC GCCTACGGCC AGCAGGAAGA CGCCACCAGC
CAGCTGCGCG GCAGCATGAT GCGTTCCGAC GGCAGCGTCA GCGCCGAATT CAAGGCCATC
AACGAACTGG CCCAGCGCCT GGGCGACCGA CTGCCCGGCA CTACTGCCGA CTTCATCAAC
ATGATGACGA TGCTGCAGCG CCAGGGCCTG AGCGCCAAAT CTGTCCTGGG CGGCACAGGC
GAGGCTGCGG CCTACCTGGG CGTGCAGCTG CGCATGCCTG TCACCGCCGC CGCAGAATTC
GCCGCCAAGA TGCAGGACGC CACCCGCACC ACCGAGGGCG ACATGATGGC CTTGATGGAC
ACCATCCAGC GCACCTTCTA CCTGGGGGTG GACTCGGGCA ACATGCTGCA GGGCTTTACC
AAGATGGGGC CGGCGCTGGG CATCATTCAC CAGGAAGGCC TGAAGGCCGC AAACACCCTC
GCCCCGCTGC TGGTCATGAT GGATCAGGCG GGCATGGCCG GCGAAGCCTC AGGCAACGCC
ATCCGAAAGG TGTTTCAGGC CACGCTCAAC GAGAAAAAGC TGGGCAAGGC CAACAAGCTG
CTCGGCAGCG AAGGCTTCCA GCTCAAGTTC GTCAACGGCA AAGGGCAGTT CGCCGGGCTG
GAGCAGCTCT ACAGCCAGCT GGCAAAGCTC AAGGGCATCA CCAGCGATGT CAAGCGCACC
ACCGTCATCC ATGAGCTGTT TGGCGACGAT GCCGAGACCA TGCAGGTGCT CAACACCCTC
ATGGACAAAG GGCTCGACGG CTACAAAGAA GTCACCCTCA AGATGCAGGC CCAGGCCGAT
CTGCGCCAGC GTGTGGAGCA GCAGCTCAAG ACGCTCAACA ACGTCAAGGA AGCGGCCATG
GGCACCTTCA CGAATGTGCT GGCCGCGCTG GGCGAGACGG TTGCCCCCGA TGCCAAGGCG
CTGATTGACT GGCTCAGCGA AGTCGCCGGC AAGACCCGCG AATGGATCGC CGCGCATCCG
GTGCTGGTCG GCTGGCTTGT CAAGGCGGTG GCCGTCGTCG CAGCGCTGAC GTTTGTGCTC
GGCGCCATCG CCCTCACCGT GGCCAGCGTG CTCGGCCCGT TCTTGCTGCT GCGGTTCGCC
ATGGGCATGA TCGGCCTTCA GGGCGGTGTG CTTGCGCTGG CGCTTCGAGG TCTCGGGCCG
GCGATCGTTT TCATCCAGAT CGTGCTCAGA ACCTTGTTCA GCATCCTGGC GAAAAACCCA
TTTGTCATGC TGGCATTGGG CATCGCCGGT TTTGCCGCCT CCATCATCGC AAACTGGGAT
GGCATCAAGG CCGCCTTCAC GATCGGCGAC TGGGGGAGCA TTGGCCATTT CATCTGGCAA
GGTCTGTTGG CGGGCCTGAA CGCAGCCACG CTGGGCATGT CTGGCCTTCT GACAAGCTTG
TTTGGCGGCA TGATCTCTAT TGTCAAATTC ATTTTTGGCA TTCAGTCCCC CAGCACCGTA
TTCGCAGAAA TGGGCCTCAT GCTCATGATG GGCCTGGTCA ACGGCATCAC CAGCGGCCTG
AGTTCCGTGC AAGCCGCCAT TTCCGGCGCG GCCAGCTCAG CCATCGGCTG GTTCAAGGAA
AAGCTCGGCA TCCACAGCCC AAGCCTGGTG TTCATGCAGG CCGGCGCCAA CGTCAGCGCC
GGCGCCGCCC TGGGCATCAC CAGCGGTTAC GCCCGGGTAC GCCAGGCAGC CGCAGGCCTC
AGCCTGGCCG CAGCCGGCGC GCTCCCGCTG GCCAGCGGCG CCGAACCCCT GCGCATCGAC
ACCCGTCCGC CCCTGGGCAG CACCGCTGCA GCACCCCTGC AGTCCGGCGG CGGCGGAAAC
ACCTACATCA CCATCAACGC CGCCCCCGGC ATGGACGCCC AGGCCCTGGC CCGGGCAGTC
GGCATCGAGC TGGACAAGCG CGACCGCCAG AAACGCGCTG CCGGCCGCTC CAGCCTGTCC
GACCTTAACT AA
|
|---|
| Protein sequence | MSNNLRLQVI LQTIDKASAV LKKIRGGSND ASQALKATRD KLKELNAAQK SVSDFRELRT
GLSTTSQQLK AAQAHVKQLA GALSASGPPT AAMVRQFEEA KRTAGNLGAQ FHRQSQQVNA
LREQLKTAGI STSNLGTHER QLRADIEATN KSLEAQKQKL KAVADHQRKL SALKASHARA
MMQTGILAAG GVGAMAAGRG MARPVGAVLG AYGQQEDATS QLRGSMMRSD GSVSAEFKAI
NELAQRLGDR LPGTTADFIN MMTMLQRQGL SAKSVLGGTG EAAAYLGVQL RMPVTAAAEF
AAKMQDATRT TEGDMMALMD TIQRTFYLGV DSGNMLQGFT KMGPALGIIH QEGLKAANTL
APLLVMMDQA GMAGEASGNA IRKVFQATLN EKKLGKANKL LGSEGFQLKF VNGKGQFAGL
EQLYSQLAKL KGITSDVKRT TVIHELFGDD AETMQVLNTL MDKGLDGYKE VTLKMQAQAD
LRQRVEQQLK TLNNVKEAAM GTFTNVLAAL GETVAPDAKA LIDWLSEVAG KTREWIAAHP
VLVGWLVKAV AVVAALTFVL GAIALTVASV LGPFLLLRFA MGMIGLQGGV LALALRGLGP
AIVFIQIVLR TLFSILAKNP FVMLALGIAG FAASIIANWD GIKAAFTIGD WGSIGHFIWQ
GLLAGLNAAT LGMSGLLTSL FGGMISIVKF IFGIQSPSTV FAEMGLMLMM GLVNGITSGL
SSVQAAISGA ASSAIGWFKE KLGIHSPSLV FMQAGANVSA GAALGITSGY ARVRQAAAGL
SLAAAGALPL ASGAEPLRID TRPPLGSTAA APLQSGGGGN TYITINAAPG MDAQALARAV
GIELDKRDRQ KRAAGRSSLS DLN
|
|---|
| |