| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pnap_3137 |
|---|
| Symbol | |
|---|
| ID | 4687145 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Polaromonas naphthalenivorans CJ2 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008781 |
|---|
| Strand | + |
|---|
| Start bp | 3329672 |
|---|
| End bp | 3331246 |
|---|
| Gene Length | 1575 bp |
|---|
| Protein Length | 524 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 639836149 |
|---|
| Product | extracellular solute-binding protein |
|---|
| Protein accession | YP_983356 |
|---|
| Protein GI | 121606027 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0687] Spermidine/putrescine-binding periplasmic protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 27 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAAATTC GCACCCTTGC CCTGCTGGCG GCCCTGACCG GCGGCGGACT GATGGCCGGA
ACCGTCCAGG CCCAGGGCTT CGTCTTCGGC ACCGGCCAGC CCCCGGCGGA CGCGGCACCC
GCACCGGCCG GCGCGCGCAA CGCCAAGGTC GAGACGGCGC AGCGCCTGCT GGCCCGGCTC
GGCCTGCTGC GCGAGACACC GAGCGGCAGC CTGACACCGG CCACGCAGGA GGCGATTCGC
GTTTTCCTGG CGCAGAACAA GCTGCCCGCA TCAAGCCAGG TCAACGACGG CCTGCTCAAT
TCGCTGCGCC GCGTCATCTG GCAAACCCAG AACTGGTCCA GCGGCAACTA CAAGGGACGC
GAGAAGCTGG TCGATGCGCA AGGCCTGCGC GAAGCGCAAA TCCTGCTGGG CAAACTGGAC
TACAACGCCG GTCCGCTCGA TGGCACGTTC GGCCCGCAAA CCCAGGTGGC GACCGAGGCT
TTCCAGGAAT CGCAGGGCGT GACGGTCGAT GGCCTGATCA CCGCCACGGT GCTGATGAAC
CTGCGCCGCG CCGTCAATGG CGCCGGCGCG TCGGCCAAAG AGACGGTGCG CGTGCTGAAC
TGGCCCGACT ACATCGATGC CGGCGTGCTG CAGGATTTCG AGAAGGAAAA CAACATCCGC
GTGGTGTACG ACATCTTCAC CAGCAACGAC GACCTGCAGG CCAGGCTGCG CGCCGGCGGC
ACGCCCTACG ACGTGGTGTT TCCCACCGCC AATGCGGTGC CGGCCATGGC CGCCAAGGGG
CTGCTCGGCA AGCTGGACAA GGCCAGCCTG AAGAACCTGG GCAACATCGA CCCGCGCGTC
GATGCCACGC TGCGCGCCTG GGACAAGGAC GGCAGCTACA GCCTGCCCTA CATGTGGTAC
ACGGTCGGCA TCGCCTGGAA CCCCAAGCTC ACGGCCAAGG CCTATCCGGG CCATGCGATG
GATTCCCTGG GCAATGTGTT CGACCCGGAA ACCGCCCGGC GCTTCCAGTC CTGCGGCGTC
GGCGTGGTCG ATTCGGCGAG CGATGTGATG CCGCTGGCGG CCATTGCCGG CGGGCAGGCC
AAGTGGAACG GCAAGAATTC GGTCAACGCC GCCAGCCAGG TGCTGGAGCG CCTGAAGGGC
ATCGTCAAGG TGATTCCCAC CGACCAGTAC ATCGACGCGC TGGCCAGCGG CAAGATCTGC
GTCGCCATCG GCTTTTCGGG CGATGCGGTG CAGGCGCAAG CCAAGTCGCG CGGCACGGTC
GAATACCGCG TGCCCACCGA GGGCGGCCTG CTGGCCATCG ACGCCATGGC CGTGCCGGCG
AATGCCAAGA ACCGGCGTGC CGCCCACCTG TTCATCGACT ACCTCATGCG CCCGCAGGTG
ATTGCGAAAA TCTCCAACAG CGTCGGCTTT GCCAACGCCA ACCTGAAGGC CGGCGAGTTC
ATGAGCGAGA GCATCAAGTC GAATCCGGCG GTTGTGCCCA GCACCGCATC GCTCAGCCGC
TCGTCGCCGA TTCCCATCCT GTCCGAGCAG GACCAGCAGG ACATCGCGCA GGCTTGGGGC
CGGTTTTCCA AATAG
|
|---|
| Protein sequence | MKIRTLALLA ALTGGGLMAG TVQAQGFVFG TGQPPADAAP APAGARNAKV ETAQRLLARL
GLLRETPSGS LTPATQEAIR VFLAQNKLPA SSQVNDGLLN SLRRVIWQTQ NWSSGNYKGR
EKLVDAQGLR EAQILLGKLD YNAGPLDGTF GPQTQVATEA FQESQGVTVD GLITATVLMN
LRRAVNGAGA SAKETVRVLN WPDYIDAGVL QDFEKENNIR VVYDIFTSND DLQARLRAGG
TPYDVVFPTA NAVPAMAAKG LLGKLDKASL KNLGNIDPRV DATLRAWDKD GSYSLPYMWY
TVGIAWNPKL TAKAYPGHAM DSLGNVFDPE TARRFQSCGV GVVDSASDVM PLAAIAGGQA
KWNGKNSVNA ASQVLERLKG IVKVIPTDQY IDALASGKIC VAIGFSGDAV QAQAKSRGTV
EYRVPTEGGL LAIDAMAVPA NAKNRRAAHL FIDYLMRPQV IAKISNSVGF ANANLKAGEF
MSESIKSNPA VVPSTASLSR SSPIPILSEQ DQQDIAQAWG RFSK
|
|---|
| |