Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Pnap_3050 |
Symbol | lysS |
ID | 4687535 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Polaromonas naphthalenivorans CJ2 |
Kingdom | Bacteria |
Replicon accession | NC_008781 |
Strand | + |
Start bp | 3223068 |
End bp | 3224633 |
Gene Length | 1566 bp |
Protein Length | 521 aa |
Translation table | 11 |
GC content | 62% |
IMG OID | 639836063 |
Product | lysyl-tRNA synthetase |
Protein accession | YP_983270 |
Protein GI | 121605941 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG1190] Lysyl-tRNA synthetase (class II) |
TIGRFAM ID | [TIGR00499] lysyl-tRNA synthetase, eukaryotic and non-spirochete bacterial |
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Plasmid Coverage information |
Num covering plasmid clones | 13 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 30 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGTCCAGCC ACCCGACTTC TCCCGCAACC GGCAGCGTTG CCCCAGCCCA CCACGACGAA AACCAGCTGA TGGTCGAGCG CCGGGAAAAA CTCGGCGCCC TGCGCAAGCA CCAGGCAGAC GGCAAGGGCG TGGCTTTCCC GAACGACATC AAGCCCGGGC ATCGGGCCGA AGCGCTGTTT GCGCAGTACA GCCACCTGAG CAATGAAGAG CTGGAGCCGC TGGCGGTCAA GGTGAGCGTG GCCGGCCGCA TGATGCTCAA GCGCGTCATG GGCAAGGCGA GCTTTGCCAC GCTGCAGGAT GCGTCGTTCG GCCCCACGGG TGGCCGCATC CAGCTCTACA TCAACAATGC CGGCGTCGGC GAGGAAGTCC ATGCGGCTTT CAAGCACTGG GATCTGGGCG ACATCGTGGC GGCGACCGGC CTGCTGTTCA GGACCAAGAC CGGCGAGTTG TCGATCCATG CCGACAGCAT CCGGCTGGTG ACCAAGAGCC TGCGCCCGCT GCCCGACAAA TTCCACGGCA TGGCCGACCA GGAAGTCAAA TACCGCCAGC GCTATGTCGA TTTGATCATG GACGAAGCCG CGCGCAAGCG CTTCATGGCG CGCAGCAAGG CCGTCAGCGG CATTCGCGAG TTCATGGTGG CGAATGACTT CCTGGAAGTC GAAACGCCGA TGCTGCATCC GATTCCGGGC GGCGCCAACG CCAAGCCGTT CAAGACCCAT CACAACGCGC TGGACCAGGA AATGTACCTG CGCATTGCGC CCGAACTCTA CCTCAAGCGC CTGATCGTCG GCGGTTTCGA ACGCGTGTTC GAGATCAACC GCAGCTACCG CAACGAAGGC ATCAGCGTTC GCCACAATCC CGAGTTCACC ATGATGGAGT TCTACGCGGC CTGGTGGAAT TACACCGATT TGATGACCTT CACCGAAGCG CTGATCCGCG ACGCAGCCCA GAAGGTCTGC GGCTCGCTGC AACTGAGCTA CGCCGGCAAG CCGGTCGATC TGAGCCAGCC CTTTGAACGG CTGACCATCC GCGAAGCCAT CCTCAAGCAT ACCGAGGCGG GCGAACAGGT GGACGACGCC GTCTGGCTGA CGAATGCCCT TAAAAAGCTC GGGCTGAACG AGGAAAAAAA CCGCCTGTCC GGCCGCTCGC TGGCCAGCCT GCAGGTGCTG TATTTTGAAG AGCTGGTTGA AGAAAAGCTC TGGCAGCCGA CCTTCATCAT GGAGCACCCG ACCGAAATCT CGCCACTGGC TAGAGCCAAC GACGAACGCC CGGAAGTCAC CGAGCGCTTT GAGCTTTACA TCACCGGCCG CGAATTCGGC AACGGTTTCA GCGAACTGAA CGATGCCGAA GAACAGGCGG TGCGCTTCAA CGCACAGGTT CATGCCAAGG ACAGCGGCGA CGATGAAGCC ATGTTCTACG ACCACGATTT CATTCGCGCC CTTGAGTACG GCATGCCGCC GACCGGCGGC TGCGGCGTGG GCATCGACCG GCTGATGATG CTGCTGACCG ACAGCCCAAG CATCCGCGAC GTGATTTTGT TCCCTGCACT GCGCCGGGAA GCCTGA
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Protein sequence | MSSHPTSPAT GSVAPAHHDE NQLMVERREK LGALRKHQAD GKGVAFPNDI KPGHRAEALF AQYSHLSNEE LEPLAVKVSV AGRMMLKRVM GKASFATLQD ASFGPTGGRI QLYINNAGVG EEVHAAFKHW DLGDIVAATG LLFRTKTGEL SIHADSIRLV TKSLRPLPDK FHGMADQEVK YRQRYVDLIM DEAARKRFMA RSKAVSGIRE FMVANDFLEV ETPMLHPIPG GANAKPFKTH HNALDQEMYL RIAPELYLKR LIVGGFERVF EINRSYRNEG ISVRHNPEFT MMEFYAAWWN YTDLMTFTEA LIRDAAQKVC GSLQLSYAGK PVDLSQPFER LTIREAILKH TEAGEQVDDA VWLTNALKKL GLNEEKNRLS GRSLASLQVL YFEELVEEKL WQPTFIMEHP TEISPLARAN DERPEVTERF ELYITGREFG NGFSELNDAE EQAVRFNAQV HAKDSGDDEA MFYDHDFIRA LEYGMPPTGG CGVGIDRLMM LLTDSPSIRD VILFPALRRE A
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