Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Pnap_2786 |
Symbol | |
ID | 4687633 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Polaromonas naphthalenivorans CJ2 |
Kingdom | Bacteria |
Replicon accession | NC_008781 |
Strand | - |
Start bp | 2929717 |
End bp | 2930451 |
Gene Length | 735 bp |
Protein Length | 244 aa |
Translation table | 11 |
GC content | 64% |
IMG OID | 639835794 |
Product | pseudouridine synthase |
Protein accession | YP_983009 |
Protein GI | 121605680 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG1187] 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases |
TIGRFAM ID | [TIGR00093] pseudouridine synthase |
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Plasmid Coverage information |
Num covering plasmid clones | 11 |
Plasmid unclonability p-value | 0.103748 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 10 |
Fosmid unclonability p-value | 0.00337231 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGCAATTGC AGGAAATTCT TTTTTCCCAG GGTTTTGGAA CGCGGCGCGT CTGCGCTGGG CTGGTTCAAC AGGGTTTTGT GACCGTGGCG GGTGTCCCCT GTACGGAGCC AGCTATGGAA TTTATAGCGG TGGGCCTGCG CTTCACGGTG CAGGGCGTGG CCTGGGAGTA CCACGAAAAA GCCTATCTGA TGTTGCACAA GCCTGCCGGC CATGAATGCT CGCAAAAGCC GAGCACCTAT CCCAGCATCT ACACGCTGCT GCCGGCACCG ATTCGCCAGC GTGGCGGCGG CGCGGCAGCC GGCGTGCAGG CGGTTGGACG GCTGGACCAG GACACGACCG GCTTGCTGCT GTTGTCGGAC GACGGCAAGT TCATTCACCG CATGAGTTCA CCCAGGCACC ACGTTCCCAA GGTCTATGAG GTGACGGCCA AGCATCCGGT GGACGCGCAG CAGGTCCAGA AGCTGCTGGC CGGCGTGGTC CTGGACGATG ACCCCAAGCC GGTCCGGGCT GCGGCCTGTG AGCAGACCAG CGAGCTGCAA CTGAGCCTGA CGCTGACCGA AGGCAAGTAC CACCAGGTCA AGCGCATGAT TGCCGCCGTC GGCAACCGGG TCGAAGGGCT CCACCGCTCG CGCATCGGTT CGCTGGCGCT GCCGGCGGAC CTCAAGCCCG GTGAATGGCG CTGGCTGACG GTGCAAGACC TGGCCAGCAT TGCCGCAAGC GCTGCGCAAA AGTGA
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Protein sequence | MQLQEILFSQ GFGTRRVCAG LVQQGFVTVA GVPCTEPAME FIAVGLRFTV QGVAWEYHEK AYLMLHKPAG HECSQKPSTY PSIYTLLPAP IRQRGGGAAA GVQAVGRLDQ DTTGLLLLSD DGKFIHRMSS PRHHVPKVYE VTAKHPVDAQ QVQKLLAGVV LDDDPKPVRA AACEQTSELQ LSLTLTEGKY HQVKRMIAAV GNRVEGLHRS RIGSLALPAD LKPGEWRWLT VQDLASIAAS AAQK
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