| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pnap_2511 |
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| Symbol | |
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| ID | 4686117 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Polaromonas naphthalenivorans CJ2 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008781 |
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| Strand | + |
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| Start bp | 2647158 |
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| End bp | 2648630 |
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| Gene Length | 1473 bp |
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| Protein Length | 490 aa |
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| Translation table | 11 |
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| GC content | 56% |
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| IMG OID | 639835519 |
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| Product | conjugation TrbI family protein |
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| Protein accession | YP_982736 |
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| Protein GI | 121605407 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG2948] Type IV secretory pathway, VirB10 components |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 0.26137 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 19 |
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| Fosmid unclonability p-value | 0.383909 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGATTTTCA GATTTGGCAA AAAGTCCCAG ACTGACGATA CAGCTGACGT TGAGGTGGCG
GCCATTGATG GCCCGGGTCA GCCGCTGGAA ATTCATACGC CACCACCTGG CACCAAGCGA
CTGTCCAAGA AAGGGCAGTT TTTACTCTTG GGCGGCGCGT CCACGGTGGC ATCGGCAATT
TTGATCGGCG TGATGATCAG CGGCAAAAGT GGTGGCAATG CTGAGTCAAA AAAACAATTG
ACCGCCAGTG ATGCGCCGGG TCAAGCGGCT CCGTACAAGG AAAACGCTGA AGACATCCAG
CGCAGAGCAA CTGTTGCCGC TGCAGCGGTT GGCAATCAAG CCACTCTTCA AATAACTGAT
GGCCAGCAAA CGGGGCCATT GACAAGCCGC TCGTCAAATC CAAAAGGCAG TCCTGGGGGA
ACTCAAACTG CCAGTGGTGG TGCCTCACCG CCCTCGCCCG CTGAGGCGCA CCGGTTGTGG
CTGCAAAAGC GCAAGTATGA GCGCATTCAG GGGCACATCA TGGCTTCTGA CTCAGCCGAA
ACCTCTGACA TCAGCAAGGG TGGTGCCGCG CTGGCTGCCA AATCGACGGC GGGAGGAATC
ATGGGCGTGA ATGCTGATGG TGAGGGCGTG GGTGGCGGTG TGAATCAAAA GCTCTCAGCC
GCCAACGGGC GTGCTGCGAA TGCGCGTGCG TCTGCCACGG CTGAGGCCAT GCGCATGGCG
AATTTGCCAG CCGGGGTGGC AGGTATCAGC AGTAACTCAG GAAATTTACC TGCCACTCTG
GCCGGTGGCG GTTCCGCCGG TCTTGATCCT GCAGTGGCGG CCCAAGCGCG CAACAAGGCT
TTCATGAAAG AAGCATTTGA CAACGGCTAC TTGCCAGAAT TGCTCAAACC CAAATTGGGG
GAATTTGAAT TGACGGCTGG CTCCGTCATC CCCGCGGTCA TGCTGTCTGG CATCAATTCC
GATCTGCCTG GAACCATCGT GGCCCAAACC CGCCAAACTG TTTATGCCAC CAATGACCCT
GACGCTGTGG TGATCCCGCA GGGCTCGCGT CTGATCGGCA GGTACTCTGC TGATGTCGCC
TATGGTCAAT CACGGGTGCT GGCGGCTTGG GATGAACTGA TTTTGCCCAA TGGCTCGCGG
ATTTCATTGC ATGGCATGTC GGCGGCCGAC GGTCAGGGTC AATCAGGCAT TGAAGATCAG
GTCAATAACC ACTTCTGGAA AACCTGGTCG TCAGCTCTGT TGGTGTCCTT TTTGGGTGTT
GCCGCCCAAC AGTCGCAGCC ACAAAACCAG GGTGCATTCA ACACCCCGTC CGGTTCGGCT
CAAGCCTCTG CTGCCGCCAT GAATTCCTTG AGTGATGTCA GTTCGAAGAT TTTGCAAAAA
AGCTTGAACA TTTCGCCCAC TCTGCAAGTT CGCCCTGGCA TGGCTTTCAA CGTCATGGTC
AACCGCTCGA TCATCTTGCC GACCTACCGA TGA
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| Protein sequence | MIFRFGKKSQ TDDTADVEVA AIDGPGQPLE IHTPPPGTKR LSKKGQFLLL GGASTVASAI
LIGVMISGKS GGNAESKKQL TASDAPGQAA PYKENAEDIQ RRATVAAAAV GNQATLQITD
GQQTGPLTSR SSNPKGSPGG TQTASGGASP PSPAEAHRLW LQKRKYERIQ GHIMASDSAE
TSDISKGGAA LAAKSTAGGI MGVNADGEGV GGGVNQKLSA ANGRAANARA SATAEAMRMA
NLPAGVAGIS SNSGNLPATL AGGGSAGLDP AVAAQARNKA FMKEAFDNGY LPELLKPKLG
EFELTAGSVI PAVMLSGINS DLPGTIVAQT RQTVYATNDP DAVVIPQGSR LIGRYSADVA
YGQSRVLAAW DELILPNGSR ISLHGMSAAD GQGQSGIEDQ VNNHFWKTWS SALLVSFLGV
AAQQSQPQNQ GAFNTPSGSA QASAAAMNSL SDVSSKILQK SLNISPTLQV RPGMAFNVMV
NRSIILPTYR
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