| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pnap_2170 |
|---|
| Symbol | |
|---|
| ID | 4687686 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Polaromonas naphthalenivorans CJ2 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008781 |
|---|
| Strand | + |
|---|
| Start bp | 2307798 |
|---|
| End bp | 2308919 |
|---|
| Gene Length | 1122 bp |
|---|
| Protein Length | 373 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | 639835180 |
|---|
| Product | permease YjgP/YjgQ family protein |
|---|
| Protein accession | YP_982399 |
|---|
| Protein GI | 121605070 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG0795] Predicted permeases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 25 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 18 |
|---|
| Fosmid unclonability p-value | 0.233438 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTTATTCC AATCTTCAAT TCGCAAGGAA TTGGCGCGCG CTTTTGGTGC CACCCTCGTG
GTGCTCATCA CCATCGTCAT GACCATCGTA CTGATTCGTA CCCTGGGCCA GGCTTCGCGC
GGCTCCATCA GCCCACAGGA CGTGATGCTT TACATGGCCT ATTCCGGCCT CGGGCGCCTG
CCGACCATCC TGACCATCTC GCTGTTCATT GCCATGGTCA GCACCCTGAC GCGCATGTAC
CGCGACAGTG AAATGGTGGT GTGGTTCACC AGCGGCCAGG GGCTGGCCGG CTTTTTGCGC
CCGCTGTTTC ACTTTGCCTG GCCGGTGCTG CTGGTCATTA CCCTGATGGC GCTGTTTGTC
TGGCCCTGGA CCAACCAGCA GACCAAGGAC ATGCAAAGCC GCTACCAGCA ACGCGGCGAC
CTGGACCGCA TCACGCCCGG CGTGTTCCAG GAATCCTCCA GCGGCAACCG GGTGTTTTTC
ATCGACCGCG ATCTGGCGGG CGAGAAGGCC AGCACCAACG TGTTCATTGC CGCCACCGAA
AAAGGGAAAA GCTCGATCAC CACCGCGCAG TCGGGCCGGA TTGAAAGCCG GGGCGACGCC
CGGTTCCTGA TGCTGTCCAA CGGCCAGCGG CTTGAAAATG ACCTGGAAAA ATCGGCGCTC
AAGATCAGCG ACTTCAAGGA ATATGGCGTC AAGACCAATG ATTCCGGGCT GCTTGGCGAA
TCCGCACCCG AGGCCAAGCT GCTGTCCACC CGCGCGCTGA TCAAAGACCC CACGCGCAGC
AACCTGGGCG AGCTGGCATG GCGGCTTGGC CTGGCCCTGT CGGCCTTCAA TTTTGTGTTT
CTGGCGGTCG CGCTGGCAAA GGTCAATCCC CGGGGCGGGC GCAGCGGCAA CATGATGTTT
GTCGTGCTGG CCTTCGTGGT TTACAACAAC CTGGTCAACC TGGGCCAGAG CTGGATTTTT
GTCGGACTGA TCAGTTTTGG CGCTCTGTTG CTCGCCTTGC ATGGTGGCGT CCTGCTGCTC
GGGCTGGCAT GGCTGGCCAA GCGGCACGCC AACTGGCGCT TCAGGCTGAA ACGCCAGCCA
CCGCATGCAC CGCTTGCGCT GCGCGCCGGG AGCCCGCCAT GA
|
|---|
| Protein sequence | MLFQSSIRKE LARAFGATLV VLITIVMTIV LIRTLGQASR GSISPQDVML YMAYSGLGRL
PTILTISLFI AMVSTLTRMY RDSEMVVWFT SGQGLAGFLR PLFHFAWPVL LVITLMALFV
WPWTNQQTKD MQSRYQQRGD LDRITPGVFQ ESSSGNRVFF IDRDLAGEKA STNVFIAATE
KGKSSITTAQ SGRIESRGDA RFLMLSNGQR LENDLEKSAL KISDFKEYGV KTNDSGLLGE
SAPEAKLLST RALIKDPTRS NLGELAWRLG LALSAFNFVF LAVALAKVNP RGGRSGNMMF
VVLAFVVYNN LVNLGQSWIF VGLISFGALL LALHGGVLLL GLAWLAKRHA NWRFRLKRQP
PHAPLALRAG SPP
|
|---|
| |