| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pnap_1703 |
|---|
| Symbol | |
|---|
| ID | 4687952 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Polaromonas naphthalenivorans CJ2 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008781 |
|---|
| Strand | + |
|---|
| Start bp | 1805475 |
|---|
| End bp | 1809701 |
|---|
| Gene Length | 4227 bp |
|---|
| Protein Length | 1408 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 59% |
|---|
| IMG OID | 639834707 |
|---|
| Product | signal transduction histidine kinase with CheB and CheR activity |
|---|
| Protein accession | YP_981937 |
|---|
| Protein GI | 121604608 |
|---|
| COG category | [N] Cell motility
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG1352] Methylase of chemotaxis methyl-accepting proteins
[COG2201] Chemotaxis response regulator containing a CheY-like receiver domain and a methylesterase domain |
|---|
| TIGRFAM ID | [TIGR00229] PAS domain S-box |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 3 |
|---|
| Plasmid unclonability p-value | 0.433463 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 24 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGGCAATG GGTGTCAGGT ATTGCAGGAG CAATACCCAC GTAGTGTTCA ACAGTATCAT
TCAACGATAT CCCTACATCC AGACCGGTTT ATCAGCATGT CAGACCAGCT TGACGTTTCT
CTAGATCCTG AAGATCAGGC CCAGCCCCTG AAAAGCCGGC TCAATTTCCC CGTGGTCGGC
ATCGGTGCTT CAGCCGGCGG CCTGGACGCC CTGTTGCGCT TTTTTGAACA GATGCCTGCG
GCCAATGGCA TGGCATTTGT CATCATTCTT CATTTGTCTC CCGAGCATCC AAGCAATGTG
GCCGAGATTT TGCGGCGGGT GACGCAGATG CCGGTCATCC AGGTGGACAA ACGCACCGCC
ATCGAAGCGG ACCATGTCTA TGTCATACCT CCCTCCCACG ATTTGGCGAT GAACGATGGC
CACCTGCAGC TGTCCGAGCC CGTCCGGGTC CGGGGAATGC ACATGGTCAT CGACCTGTTT
TTTCGCACGC TGGCCCAGTC TCACCAGGAA AGGGCGATGG CCATCGTGAT GTCCGGCACC
GGCATGGACG GCGCGGCCGG GCTGGCCCGG GTCAAGGAGC AGGGTGGCGT GACCCTGGCG
CAAGCGCCTG AAGATGCCGA GTACGGCGGC ATGCCCAAAG CCGCCATTGC CACGGGCATG
GTCGATTTCA CCCTGAATGC GGTCGATATG CCGCAGCGCC TGATTGAACT GTGGACCAAT
GCCCGCCGCA TCAGCCTGCC CAGGGATGCC GCGCCTTCGA TGGATGTCAT GGCCTTTGAC
AGTGCGCAAG CGGCCCGGCT TGCCGAAGAG GCTTTGCAGG ACATCATGGC CCTGCTGCGC
AGCTACTCCA AAAACGATTT CCGGCAGTAC AAGCGGGCCA CCGTTCTGCG CCGCATCGAG
CGCCGGCTGC AGGTCAGGCG CCTTCCGGAT TTGCCGGCCT ACCGCGACTA CCTGCGCGAG
CACCCTGAAG AGGCCAAGCC GCTGCTTCAG GACATGCTGA TCAGCGTCAC CAACTTCTTT
CGCGACCCCG AGGCTTTTGA AGCGCTTGAG CACGATGTGC TGCCCAGCCT GTTGCGCAAC
CGTCCGCCCG ACGATCCGGT GCGCGTCTGG GTGGCCGGCT GCGCCACGGG CGAGGAAGCC
TATTCCGTCA CCATGCTGTT GCAGGAGCAG ATGAACCTGC AAAACTGCAT GTCGGAGTTG
CTGGTGTTTG CGACCGACAT TGATGAGAGG GCAATCAGCG TTGGCCGCAA TGCCCTGTAT
CCCGAATCGA TCACGACGGA TGTGTCGCCC GGAAGGCTGC GGCAGTTTTT TATCCGCGAA
AAAGACCAGT TCAGGGTCAT CAAGCAACTG CGGGAAAAGG TGCTGTTTGC CAATCACAAC
GTGCTGCGCG ACCCGCCCTT TTCCCGGATC GACCTGGTTT GCTGCCGCAA CCTGCTGATT
TACCTGGACA AGGCCGCCCA GGCCCGTGTT CTTGAATCGT TTCGCTTTTC GCTCAAGCCT
TCGGGGTTTT TGTTCCTGGG CAATTCGGAG TCCGCGGATG CGGCACCCAG CCTTTTCACG
GTGCATGATA AAAAAAACCG TATCTACAAG GTTAATCAGA ATTCGCATGC ATCGCGCCTT
TTGCTGCTGA CCACGGATTT CCCACGCGAC CACACGACTC TCGCACTGCC CGGACAGGTG
CGGCGCGAGT CCAAGCTTGC GTCATTCGCC GAGATGCACC GCAAGCTCAT TGACCAGATT
GCCTTGCCCA GCGTGCTGAT AGACGCCAGC CACAATATCC TGCATCTGTC CGATAACGTC
GGCAAATTCC TGTTGCCGGG CGGCGGCGCT CCATCGGTCA ATCTTCTGGA CAACATGCAG
CCCGAACTCC GCACGGAATT GCGCACGGCG CTTTACCAGG CGATGCATAC CGGCAAGCCC
GTCAAGACCC ACGCCATTGC GACTCAACGC GGCGACAGCC AGGCGCTGGT TGAAATGACC
GTGCGCTTCT TCGGGGAAGA GGGGCCGGAA GCGGCGCTGA CGCTGGTGAT GTTCGATGAG
GTGCCGGAAA AGCCCGGCGA TCTGCAGCTC AAAGGCATCG ACCAGGCGCA GCAACAGGTC
ATTGCGCAGC TGGAAGCCGA GATTCGGCAA CTCAAGGAGG ACTTGCAGCA GACCATCGAG
CAGGCCGAAA CATCCACCGA AGAACTCAAG GCATCGAATG AAGAACTGCA GGCCATCAAC
GAAGAACTGC GCTCGGCCAC CGAGGAGCTG GAAACCAGCA AGGAAGAGCT GCAGTCCATC
AATGAAGAGC TGACGACCGT CAACTTTGAA TTGAAAATCA AGGTCGATGA AACCAGCAAG
ATCAACAACG ACCTGCAGAA CTTCATCACC TCGACAGACA TTGCCACCAT CTTCATTGAC
CGGGGCATGC GCATCAAGCG CTATACACCG CAGTCGGCCA GCCTCTTCAA CCTGATCGAG
TCCGACCTCA ACCGCTCCCT GCTCGACATC ACCCACAAGC TGGACTACAG CGCGCTGGTC
AATGATGTTA CCGAAGTCTT CAACACGCTC AACAAGGTGG AGCGGCAGGT CAGCAGCAGC
GACGGCCGGC ATTACCTGGC GCGCATCCGG CCCTACCGCA CCACCGATGA CCGGATTGAA
GGCGCGGTGC TGACCTTTGT CGATGTGACG GCCCTGCGCC AGGCCGAGGA AAATGTGCGC
GCGGGTGAAG AGCGCCTGCG CATCGCGGCC GAAACCACCA AGGACTACGC CATCCTGACC
ATTGATGAAG AAGGCCTCAT CACGACCTGG AACCACGGCG CCGAGCGGAT CTTTGGCTAT
TCTGAAAAAG AAGCGGTCGG CCAGCTGTTT GCGATCATCT TTACCCCCGA AGACCGGGCC
GCGGGCGCTG CCGACGAGGA GTTGCGCCTC GCCCGCGAAG AAGGGCGTTC GACCGATGAG
CGCTGGCATT TGCGCAAGGA CGGCAGCACC TTCTTTTGCA GCGGCGTGGT GACTCGCCTG
GAAGGGAAAA TGGGCGGCTA TGCCAAGATT GCCCGCGACA TCACGGAAAA CAAGACCCTG
CAGGTCAGCC GCGATGAACT GCTGGCCATG GAAAAACGGG CCAATGAACT GAAGGACCAG
TTCCTGGCGG TGATGTCGCA TGAACTCAAG CACCCGCTGA ACCTGATCCA GGTGAATACC
GAATTGCTGC TCAGCCAGCC CGAGGTGCGC GCACTGCCCG AAGTGGTGCG TGCCGGCGAA
ACCATTCGCC ACGCGGTGGT GAGCCAGACC AAGATCATTG ACGACCTGCT GGACCTGTCG
CGCGCCCGAA CCGGCAAGCT GACGCTCAGG CTGGCCCCGG TGAACCTTGA TGAGCTGGCC
GAGATGATTG CCTCCGCAGC CCGCGAAGCC GCCAGCAAGA AAGGCCTGAC GCTGGTCTAT
GAATGCAGTG ACAAGGAAGT GCTTGCATTG TGTGACCGCG TCCGGACCGA ACAGATTTTC
TGGAACCTGA TCAACAACGC CATCAAGTTC ACGCCTGAAG GCGGGACCAT CACGGTGCAG
CTGGAACGCG ATGCCGAGTT TGCAAAATTC AGCGTGACCG ACACCGGCCA GGGAATTACC
GCTGAGTTTT TGCCGCAGAT TTTCGGCATG TTTGTTCAGG CACCCAATCA AAAGGTACCC
AGCACCAACA TGGGGCTGGG TGTGGGTTTG ACGCTGGTGC GCGACCTGAC GGTGGCCCAG
GGCGGCAAAG TGCTGGCCGA TTCGGCCGGC CTGGGCAAAG GCGCCACGTT CAGCGTCTGG
CTGCCGCTGG CCCAAACCAC GCAGCAGGAC AAAAAAACCA TTGAACAAAC CGGAAACCTG
AAGGGCCTGA AGATTCTGGT TGTCGATGAC ATGATCGACC TGCTGGAGCC ATTCGCGGCG
CTGCTGCGTC TGGAAGGGGC CACGGTTGAC ATGGCGACCA GCGGCCAGGA GGCGCTGGAG
TTGCTGGACA AAAGCGCTTA CGACCTGCTG ATTTCTGACA TCGGCATGCC TTACATGGAC
GGCTACGAGC TGATCCGCAA AATCCGCAAG ATTCCAGGAT TGCACGCTCT GAAAGCCATT
GCCTTGAGTG GTTATGGCCG GCAGGTCGAT GCCGTGCGTG CCTTGCAAAG CGGTTTCGAT
GCCCACCTGT CAAAACCCGC CACGGTGGCG CATATTTGCC AGACCATTGC GCAACTGGTT
TCCAAAGCCG AAGGTGAAGT GCAATAA
|
|---|
| Protein sequence | MGNGCQVLQE QYPRSVQQYH STISLHPDRF ISMSDQLDVS LDPEDQAQPL KSRLNFPVVG
IGASAGGLDA LLRFFEQMPA ANGMAFVIIL HLSPEHPSNV AEILRRVTQM PVIQVDKRTA
IEADHVYVIP PSHDLAMNDG HLQLSEPVRV RGMHMVIDLF FRTLAQSHQE RAMAIVMSGT
GMDGAAGLAR VKEQGGVTLA QAPEDAEYGG MPKAAIATGM VDFTLNAVDM PQRLIELWTN
ARRISLPRDA APSMDVMAFD SAQAARLAEE ALQDIMALLR SYSKNDFRQY KRATVLRRIE
RRLQVRRLPD LPAYRDYLRE HPEEAKPLLQ DMLISVTNFF RDPEAFEALE HDVLPSLLRN
RPPDDPVRVW VAGCATGEEA YSVTMLLQEQ MNLQNCMSEL LVFATDIDER AISVGRNALY
PESITTDVSP GRLRQFFIRE KDQFRVIKQL REKVLFANHN VLRDPPFSRI DLVCCRNLLI
YLDKAAQARV LESFRFSLKP SGFLFLGNSE SADAAPSLFT VHDKKNRIYK VNQNSHASRL
LLLTTDFPRD HTTLALPGQV RRESKLASFA EMHRKLIDQI ALPSVLIDAS HNILHLSDNV
GKFLLPGGGA PSVNLLDNMQ PELRTELRTA LYQAMHTGKP VKTHAIATQR GDSQALVEMT
VRFFGEEGPE AALTLVMFDE VPEKPGDLQL KGIDQAQQQV IAQLEAEIRQ LKEDLQQTIE
QAETSTEELK ASNEELQAIN EELRSATEEL ETSKEELQSI NEELTTVNFE LKIKVDETSK
INNDLQNFIT STDIATIFID RGMRIKRYTP QSASLFNLIE SDLNRSLLDI THKLDYSALV
NDVTEVFNTL NKVERQVSSS DGRHYLARIR PYRTTDDRIE GAVLTFVDVT ALRQAEENVR
AGEERLRIAA ETTKDYAILT IDEEGLITTW NHGAERIFGY SEKEAVGQLF AIIFTPEDRA
AGAADEELRL AREEGRSTDE RWHLRKDGST FFCSGVVTRL EGKMGGYAKI ARDITENKTL
QVSRDELLAM EKRANELKDQ FLAVMSHELK HPLNLIQVNT ELLLSQPEVR ALPEVVRAGE
TIRHAVVSQT KIIDDLLDLS RARTGKLTLR LAPVNLDELA EMIASAAREA ASKKGLTLVY
ECSDKEVLAL CDRVRTEQIF WNLINNAIKF TPEGGTITVQ LERDAEFAKF SVTDTGQGIT
AEFLPQIFGM FVQAPNQKVP STNMGLGVGL TLVRDLTVAQ GGKVLADSAG LGKGATFSVW
LPLAQTTQQD KKTIEQTGNL KGLKILVVDD MIDLLEPFAA LLRLEGATVD MATSGQEALE
LLDKSAYDLL ISDIGMPYMD GYELIRKIRK IPGLHALKAI ALSGYGRQVD AVRALQSGFD
AHLSKPATVA HICQTIAQLV SKAEGEVQ
|
|---|
| |