| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pnap_0613 |
|---|
| Symbol | |
|---|
| ID | 4686070 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Polaromonas naphthalenivorans CJ2 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008781 |
|---|
| Strand | - |
|---|
| Start bp | 647219 |
|---|
| End bp | 648454 |
|---|
| Gene Length | 1236 bp |
|---|
| Protein Length | 411 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 57% |
|---|
| IMG OID | 639833607 |
|---|
| Product | IS605 family transposase OrfB |
|---|
| Protein accession | YP_980853 |
|---|
| Protein GI | 121603524 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG0675] Transposase and inactivated derivatives |
|---|
| TIGRFAM ID | [TIGR01766] transposase, IS605 OrfB family, central region |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 24 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAGCGCC TCCAGGCCTT CAAATTCGAG CTGATGCCAA ACGGCGGGCA GCAGCAGAGC
ATGCGCCGCT TCGCCGGGGC GCGCAGGTTT GTCTATAACA AGGCGTTGGA TATTCAAAAG
GCCAACTATG CCGCAGGCGG CAAATTCATC GGTTACGTCG ATATGGCGAA CCGCCTTCCT
GAGTGGAAAA AAGAGTTTGA ATGGCTCAAG GAGTCGCCCT CGCAATCCTT GCAGCAATCG
CTGAAAGATT CGGAGCGCGC TTTCAAAAAC TTCTTTGAAA AACGCGCAGA CTTTCCGCGT
CCCAAAAAGA AAGGCCGTGG CGAGAGTTTC AGGTTTCCGC AGGGCTTTGA AATCGACCAA
GGCAACAGCC GCATCAAGCT GCCCAAGCTG GGCTGGATTC GCTACCGCAA CAGCCGGGGC
ATTCTTGGCA CGGCCAAAAA CATCACCATC AGCCAGTCGG GCGCAAAGTG GTTTGCCAGT
ATCCAGACTG AGCGCGAAGT CGGGCAACCC ATTCCAGCAG CCACCAGCGC CATTGGAATC
GACGTGGGCA TAGCCCGATT CGCCACGATG AGTGACGGCA GTTTTGCCCT GCCGCTGAAC
AGCTTCAAGA AGCGCGAACA GAGGCTCAAA AAGTACCAGC GGCGCATGAG CCGCAAAGTC
AAAAACAGCC GGAACTGGCA CAAAGCCAAA AGGAGGGTGC AAAACATCCA CATCCACATC
GGTAACGCCC GCAAAGACTT CCTGCACAAG AAGACAAGCG ACCTCAGTAA AAACCACGCG
ATGGTGGCTG TCGAAGACTT GCAGGTACGC AACATGAGCC GGTCAGCAGC GGGCAATGCA
GAAAAATCGG GCAAAAACGT AGCCGCCAAG TCGGGGCTGA ACAAGTCCAT CCTTGACCAA
GGCTGGTTTG AATTCCGGCG GCAGCTTGAG TACAAGCTCA ACTGGAGCGG CGGGATACTC
ATTGCCGTGC CGCCCCAGTA CACCAGCCAG ACCTGCCCGT GCTGCGGGCA TGTGGCAAAG
GAAAACCGCC AAACGCAAGC GAAGTTTGAA TGCGTCGATT GCGGCTACGA GAACCACGCC
GATGTCGTCG GCGCGATGAA CATATTGGCG CGGGGATACC GCGCAGCAGC CTGTGGAGAG
GAAGGCTCTG GCCTTGCGCG CAAGCGCAAG ACGAAACCAG CCTCTGTGAA GCAGGAACCC
ACCGAAGTGA CTATGCGTGA GGCAGCTCAT GTGTAG
|
|---|
| Protein sequence | MKRLQAFKFE LMPNGGQQQS MRRFAGARRF VYNKALDIQK ANYAAGGKFI GYVDMANRLP
EWKKEFEWLK ESPSQSLQQS LKDSERAFKN FFEKRADFPR PKKKGRGESF RFPQGFEIDQ
GNSRIKLPKL GWIRYRNSRG ILGTAKNITI SQSGAKWFAS IQTEREVGQP IPAATSAIGI
DVGIARFATM SDGSFALPLN SFKKREQRLK KYQRRMSRKV KNSRNWHKAK RRVQNIHIHI
GNARKDFLHK KTSDLSKNHA MVAVEDLQVR NMSRSAAGNA EKSGKNVAAK SGLNKSILDQ
GWFEFRRQLE YKLNWSGGIL IAVPPQYTSQ TCPCCGHVAK ENRQTQAKFE CVDCGYENHA
DVVGAMNILA RGYRAAACGE EGSGLARKRK TKPASVKQEP TEVTMREAAH V
|
|---|
| |